Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1851 ATGGCGGACCGTGGATCTTACGCCTTGGCTCCTCGTCTAGATATCAACCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCAAAGTTTCAGATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTAAAGGAAGCTCATGAGAAGTTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGAAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATCGGAGCTGTTGTTGAAATTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCATATGAGTTCTAGCTATTCTAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGAGACTGAAGACACGTACCAAGCAACTTCAAGATTTCACTCGTTTTCAACGTCACCAAAAATGAGCAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCAAATTTTTACTTTCCACATTCCTCTTCCCATAATGTTGAATCTTGGTCATCAGTTCCTGCTATGGAATCCGTACTACGAGTTGAGAATGATGGACTTGGGAGTAGTGATGGTGGTACTGGTGTAATTGGTTCTCAGAAGACACTCAGCTCTGCTTCGTGGGAAGAAATCTTGCATCAATGTTCAACTGGATTTCAAACTGTACCTTCTCAAGTTTTAAACTCTTCTGGAATTGTTCTTGGACAAGAGAATTCAATTCCTGGCAAGTTTTTGCCCGGTAATAGTTCTATGAGAGAGGACTTCGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGATGACAGTACTTTGTCCTTCTCAAAAGGGCACGTTGACCAGTATCCAGATTTATATTCAGGTTATGACATAGATGGCAGGTTACCTGAGCAGAAATCTCTTAATCCAACTTTTGGAAGTGATCATGAAATGTTTTGTGCTCATCCTGGAATAGAGAATGAAGAGATTTTCTCAAACAACCTAGAACCGCAGTTCAATGAAAAAGAATCGCATTATGCAATGAGGTTGAATTCTGAAAATGATATGTCTAAAGAAGGTTCCATCAGCTATTCTTTGTCCCTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTTTCACGTTGGGTATCTAAAGAGCTTGTGGAAGTTGATGATTTGCACATGCACCCCTCATCTGGCTTGTCTTGGACCTCTGTAGAATGTGGAGATATGGTAGATGATTCATCATTGAGTCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCAAAGTGGACACTTTCAGATTTAGAAACTGAGGTTGTGATCATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCATGCACCGCCGCATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTTCTTGGCAGGCTCTGCTCAAGATGTAGATGCTACCAATGTATATGCTGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCTCCTAGATCTTCAGATCCAGCAAATAACCTCTCTGAAGGCTCCTTGGAGAAACGGAGCTTAATTAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGTCGAATTCTCAGAATGATCAAATTCATCATCAAAGCAAGGATTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCATGGCTTATCAGTAAAGTAGTTGAAGATGGCAAAGGTCCTAATATATTGGATGATAAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCAATTGTAGCTACAGGTGTGAGTATAAACTTCAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTGTGCCAGGGAGTTGACAGTTGGAACTCTTTTAACTTTGGGTGCTGCTCCTGAATTTCTGACAGATCCATCTCCAGAAAATCCTTTGGGCCAAATGGCTTCGGACCTTGCTTCTAGTAAAGGACAGAAAGGGATGTCTGGTTTTCTGGCGGAGTCAGCATTGACCAGCTTTGTATCATCTGTATCGATGGAAGATACCAAAGAAGGCGTGTATACGGTTTCCGAACGAAGGGCAACACCGGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCAGTCTGCAATGCTACTCAAGCTGCTGACCGTATACATATGATGTTTAGAATGAAGTCATTTCAGAGTAAAAAACTAGCAAAATGTAGTCCTGATGAATTTGGATCCCCAGATGATACAGCTATTTCATTTGTCACTGCTAGGGGACGTAAGTCGGGATTAAGTAACAGCCCAACCCATTCGGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGGCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACATCAGGTGAGAAAGCAATATAAAAAGATTGTCTGGTCGGTAGGGTTATTAGAAAAAATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCGGAGACAGTTGCCAAGGATCCACCCGCCGTGATCGAACCACCTAAAGAAGATGATTATGATTTTCTGAAGAAAGGAAGAAGGCAAACTGAGGAGAGATTTCAAAAAGCCCTTACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAGTACCGTAGGCTACTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGTTATTACCAGTACTTCAGAAGAGATAATAGAAGGCGACATGATTGATATCGACACACTGCTGGACGACGACGCTTTGATGTCTATGACATTTGATTGA 3234 41.68 MADRGSYALAPRLDINQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVEIDEVSSSSQKSSHMSSSYSSSHNQAASENADSPSPTSTLTSFCEDAETEDTYQATSRFHSFSTSPKMSNGLLVNKKDAGLSNFYFPHSSSHNVESWSSVPAMESVLRVENDGLGSSDGGTGVIGSQKTLSSASWEEILHQCSTGFQTVPSQVLNSSGIVLGQENSIPGKFLPGNSSMREDFGSSLTMTSNWQVPFDDSTLSFSKGHVDQYPDLYSGYDIDGRLPEQKSLNPTFGSDHEMFCAHPGIENEEIFSNNLEPQFNEKESHYAMRLNSENDMSKEGSISYSLSLKQSLIDGEESLKKVDSFSRWVSKELVEVDDLHMHPSSGLSWTSVECGDMVDDSSLSPSLSEDQLFSITDFSPKWTLSDLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDFLAGSAQDVDATNVYAAGATEELHMHLRFERLLSPRSSDPANNLSEGSLEKRSLIRKLISIKEEEDCYGEESNSQNDQIHHQSKDSLFVKLMKEKLYSWLISKVVEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSINFRDVNGWTALHWAAFCARELTVGTLLTLGAAPEFLTDPSPENPLGQMASDLASSKGQKGMSGFLAESALTSFVSSVSMEDTKEGVYTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAADRIHMMFRMKSFQSKKLAKCSPDEFGSPDDTAISFVTARGRKSGLSNSPTHSAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGLLEKIILRWRRKGSGLRGFRPETVAKDPPAVIEPPKEDDYDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMVITSTSEEIIEGDMIDIDTLLDDDALMSMTFD 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35465764 35479496 + Sed0019080.1 Sed10g1851 728355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1851 1077 Gene3D Immunoglobulins 496 591 IPR013783 -
Sed10g1851 1077 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 952 IPR027417 -
Sed10g1851 1077 FunFam Calmodulin-binding transcription activator 2 901 949 - -
Sed10g1851 1077 SUPERFAMILY E set domains 503 587 IPR014756 -
Sed10g1851 1077 MobiDBLite consensus disorder prediction 156 187 - -
Sed10g1851 1077 Gene3D - 902 949 - -
Sed10g1851 1077 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 FunFam Calmodulin-binding transcription activator 2 496 591 - -
Sed10g1851 1077 ProSiteProfiles IQ motif profile. 925 949 - -
Sed10g1851 1077 Pfam IPT/TIG domain 502 575 IPR002909 -
Sed10g1851 1077 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 SMART iq_5 924 946 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 SMART iq_5 901 923 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1041 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed10g1851 1077 Gene3D - 637 792 IPR036770 -
Sed10g1851 1077 SUPERFAMILY Ankyrin repeat 687 796 IPR036770 -
Sed10g1851 1077 ProSiteProfiles IQ motif profile. 902 931 - -
Sed10g1851 1077 Pfam IQ calmodulin-binding motif 927 946 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 Pfam IQ calmodulin-binding motif 903 922 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1851 K21596 - - csv:101203707 1708.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0966 Sed-Chr6:12802607 Sed10g1851 Sed-Chr10:35465764 0.00E+00 dispersed
Sed10g1851 Sed-Chr10:35465764 Sed13g0919 Sed-Chr13:6879784 6.00E-196 dispersed
Sed10g1851 Sed-Chr10:35465764 Sed10g1852 Sed-Chr10:35465764 0.00E+00 tandem
Sed02g1117 Sed-Chr2:48380950 Sed10g1851 Sed-Chr10:35465764 2.60E-142 transposed
Sed10g1851 Sed-Chr10:35465764 Sed06g0965 Sed-Chr6:12802607 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39840 PF03859 CG-1 2.20E-50 No_clan Sed TF