Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1851 ATGGCGGACCGTGGATCTTACGCCTTGGCTCCTCGTCTAGATATCAACCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCAAAGTTTCAGATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTAAAGGAAGCTCATGAGAAGTTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGAAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATCGGAGCTGTTGTTGAAATTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCATATGAGTTCTAGCTATTCTAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGAGACTGAAGACACGTACCAAGCAACTTCAAGATTTCACTCGTTTTCAACGTCACCAAAAATGAGCAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCAAATTTTTACTTTCCACATTCCTCTTCCCATAATGTTGAATCTTGGTCATCAGTTCCTGCTATGGAATCCGTACTACGAGTTGAGAATGATGGACTTGGGAGTAGTGATGGTGGTACTGGTGTAATTGGTTCTCAGAAGACACTCAGCTCTGCTTCGTGGGAAGAAATCTTGCATCAATGTTCAACTGGATTTCAAACTGTACCTTCTCAAGTTTTAAACTCTTCTGGAATTGTTCTTGGACAAGAGAATTCAATTCCTGGCAAGTTTTTGCCCGGTAATAGTTCTATGAGAGAGGACTTCGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGATGACAGTACTTTGTCCTTCTCAAAAGGGCACGTTGACCAGTATCCAGATTTATATTCAGGTTATGACATAGATGGCAGGTTACCTGAGCAGAAATCTCTTAATCCAACTTTTGGAAGTGATCATGAAATGTTTTGTGCTCATCCTGGAATAGAGAATGAAGAGATTTTCTCAAACAACCTAGAACCGCAGTTCAATGAAAAAGAATCGCATTATGCAATGAGGTTGAATTCTGAAAATGATATGTCTAAAGAAGGTTCCATCAGCTATTCTTTGTCCCTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTTTCACGTTGGGTATCTAAAGAGCTTGTGGAAGTTGATGATTTGCACATGCACCCCTCATCTGGCTTGTCTTGGACCTCTGTAGAATGTGGAGATATGGTAGATGATTCATCATTGAGTCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCAAAGTGGACACTTTCAGATTTAGAAACTGAGGTTGTGATCATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCATGCACCGCCGCATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTTCTTGGCAGGCTCTGCTCAAGATGTAGATGCTACCAATGTATATGCTGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCTCCTAGATCTTCAGATCCAGCAAATAACCTCTCTGAAGGCTCCTTGGAGAAACGGAGCTTAATTAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGTCGAATTCTCAGAATGATCAAATTCATCATCAAAGCAAGGATTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCATGGCTTATCAGTAAAGTAGTTGAAGATGGCAAAGGTCCTAATATATTGGATGATAAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCAATTGTAGCTACAGGTGTGAGTATAAACTTCAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTGTGCCAGGGAGTTGACAGTTGGAACTCTTTTAACTTTGGGTGCTGCTCCTGAATTTCTGACAGATCCATCTCCAGAAAATCCTTTGGGCCAAATGGCTTCGGACCTTGCTTCTAGTAAAGGACAGAAAGGGATGTCTGGTTTTCTGGCGGAGTCAGCATTGACCAGCTTTGTATCATCTGTATCGATGGAAGATACCAAAGAAGGCGTGTATACGGTTTCCGAACGAAGGGCAACACCGGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCAGTCTGCAATGCTACTCAAGCTGCTGACCGTATACATATGATGTTTAGAATGAAGTCATTTCAGAGTAAAAAACTAGCAAAATGTAGTCCTGATGAATTTGGATCCCCAGATGATACAGCTATTTCATTTGTCACTGCTAGGGGACGTAAGTCGGGATTAAGTAACAGCCCAACCCATTCGGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGGCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACATCAGGTGAGAAAGCAATATAAAAAGATTGTCTGGTCGGTAGGGTTATTAGAAAAAATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCGGAGACAGTTGCCAAGGATCCACCCGCCGTGATCGAACCACCTAAAGAAGATGATTATGATTTTCTGAAGAAAGGAAGAAGGCAAACTGAGGAGAGATTTCAAAAAGCCCTTACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAGTACCGTAGGCTACTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGTTATTACCAGTACTTCAGAAGAGATAATAGAAGGCGACATGATTGATATCGACACACTGCTGGACGACGACGCTTTGATGTCTATGACATTTGATTGA 3234 41.68 MADRGSYALAPRLDINQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVEIDEVSSSSQKSSHMSSSYSSSHNQAASENADSPSPTSTLTSFCEDAETEDTYQATSRFHSFSTSPKMSNGLLVNKKDAGLSNFYFPHSSSHNVESWSSVPAMESVLRVENDGLGSSDGGTGVIGSQKTLSSASWEEILHQCSTGFQTVPSQVLNSSGIVLGQENSIPGKFLPGNSSMREDFGSSLTMTSNWQVPFDDSTLSFSKGHVDQYPDLYSGYDIDGRLPEQKSLNPTFGSDHEMFCAHPGIENEEIFSNNLEPQFNEKESHYAMRLNSENDMSKEGSISYSLSLKQSLIDGEESLKKVDSFSRWVSKELVEVDDLHMHPSSGLSWTSVECGDMVDDSSLSPSLSEDQLFSITDFSPKWTLSDLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDFLAGSAQDVDATNVYAAGATEELHMHLRFERLLSPRSSDPANNLSEGSLEKRSLIRKLISIKEEEDCYGEESNSQNDQIHHQSKDSLFVKLMKEKLYSWLISKVVEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSINFRDVNGWTALHWAAFCARELTVGTLLTLGAAPEFLTDPSPENPLGQMASDLASSKGQKGMSGFLAESALTSFVSSVSMEDTKEGVYTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAADRIHMMFRMKSFQSKKLAKCSPDEFGSPDDTAISFVTARGRKSGLSNSPTHSAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGLLEKIILRWRRKGSGLRGFRPETVAKDPPAVIEPPKEDDYDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMVITSTSEEIIEGDMIDIDTLLDDDALMSMTFD 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35465764 35479496 + Sed0019080.1 Sed10g1851 728355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1851 1077 Gene3D Immunoglobulins 496 591 IPR013783 -
Sed10g1851 1077 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 952 IPR027417 -
Sed10g1851 1077 FunFam Calmodulin-binding transcription activator 2 901 949 - -
Sed10g1851 1077 SUPERFAMILY E set domains 503 587 IPR014756 -
Sed10g1851 1077 MobiDBLite consensus disorder prediction 156 187 - -
Sed10g1851 1077 Gene3D - 902 949 - -
Sed10g1851 1077 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 FunFam Calmodulin-binding transcription activator 2 496 591 - -
Sed10g1851 1077 ProSiteProfiles IQ motif profile. 925 949 - -
Sed10g1851 1077 Pfam IPT/TIG domain 502 575 IPR002909 -
Sed10g1851 1077 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Sed10g1851 1077 SMART iq_5 924 946 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 SMART iq_5 901 923 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1041 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed10g1851 1077 Gene3D - 637 792 IPR036770 -
Sed10g1851 1077 SUPERFAMILY Ankyrin repeat 687 796 IPR036770 -
Sed10g1851 1077 ProSiteProfiles IQ motif profile. 902 931 - -
Sed10g1851 1077 Pfam IQ calmodulin-binding motif 927 946 IPR000048 GO:0005515(InterPro)
Sed10g1851 1077 Pfam IQ calmodulin-binding motif 903 922 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0966 Sed-Chr6:12802607 Sed10g1851 Sed-Chr10:35465764 0.00E+00 dispersed
Sed10g1851 Sed-Chr10:35465764 Sed13g0919 Sed-Chr13:6879784 6.00E-196 dispersed
Sed10g1851 Sed-Chr10:35465764 Sed10g1852 Sed-Chr10:35465764 0.00E+00 tandem
Sed02g1117 Sed-Chr2:48380950 Sed10g1851 Sed-Chr10:35465764 2.60E-142 transposed
Sed10g1851 Sed-Chr10:35465764 Sed06g0965 Sed-Chr6:12802607 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39840 PF03859 CG-1 2.20E-50 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1851 K21596 - csv:101203707 1708.35