Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1872 ATGGATTTCTTCTCCAGAAAGCTTCTCTCCGACGACGAAGACGATGTCAAAAAACTCTGCTATGAAATCTGCCCCACTTACTCCGGCGATTCCTGCCCTTCCGATTGCAAAAAGAAATGCTCATATGATTGTTTTTCAATCCCACCGCCAAATTACTCCAAATCGCCTCACAAAATCAACTGGGTCGTCGCCACCGTCGCCGTTCTCTCCATCACCTTTCTCCTCGTCCTCTTCTACGCCGTTTACGCCCGATTTTACTCCCGCCGCCGTGCCCACCGCCGCACCGACGTCCCTCCGGCCGCCGTTAACCAGCAGGAGTTTCTCGACGAGGAACACGGCCCTGTTTTGGACCACCCCATTTGGTACATCCGCACCGTCGGCCTCCCGGCGGCGGTCATCGACGCCATCGCCGTCTGCAAGTTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTCGAAGAAGATGAAACGCTCAGACTTTTGCCAAAATGTAGCCACGCTTTTCATCTCCAATGTATTGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCGCCCCCGTCGCGGCGGTGGCAGAGGCTCCATCGGTGACTCCGTCGCCGCAGCCGGTGTCGGCCTCGGAAGAAACCCAGATGGAGGAATTGGGGGAAAATTCTGTGAGAATTGAAGAAGACCAAGATGAAATTCAATTGGGTGATGATGAATTAGAACAAAGAGTTGGTGATTTTCAGGCTGTGAGAAGATCTGTGTCTTTAGATTCTGTATCAGCTCTTCGAATTTCCTCTGTTCTTGGTTGTGTTAGTGAAAAGATGGATTGTGATGACGAAATTGGGCTGAGAAATGGGAATGGATTGAAGAAATTATCACAGGAAAGTGGGAATTCTTCAGCTGCTATGAACAGGTCAGTTTCTTTTAGTGGAAAATTTCTGATGAGATCTTCCACTCAGAGAAGTATTGGGAACTGA 996 50.0 MDFFSRKLLSDDEDDVKKLCYEICPTYSGDSCPSDCKKKCSYDCFSIPPPNYSKSPHKINWVVATVAVLSITFLLVLFYAVYARFYSRRRAHRRTDVPPAAVNQQEFLDEEHGPVLDHPIWYIRTVGLPAAVIDAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLQCIDTWLRSHTNCPMCRAPVAAVAEAPSVTPSPQPVSASEETQMEELGENSVRIEEDQDEIQLGDDELEQRVGDFQAVRRSVSLDSVSALRISSVLGCVSEKMDCDDEIGLRNGNGLKKLSQESGNSSAAMNRSVSFSGKFLMRSSTQRSIGN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35599711 35600994 + Sed0007105.1 Sed10g1872 728376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1872 331 Pfam Ring finger domain 152 195 IPR001841 -
Sed10g1872 331 FunFam RING-H2 finger protein ATL54 128 201 - -
Sed10g1872 331 SMART ring_2 153 194 IPR001841 -
Sed10g1872 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 203 IPR013083 -
Sed10g1872 331 SUPERFAMILY RING/U-box 147 201 - -
Sed10g1872 331 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 58 201 - GO:0016567(PANTHER)
Sed10g1872 331 CDD RING-H2_EL5-like 152 195 - -
Sed10g1872 331 SMART FANCL_C_2 149 203 - -
Sed10g1872 331 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0166 Sed-Chr4:1126827 Sed10g1872 Sed-Chr10:35599711 4.70E-33 dispersed
Sed10g0839 Sed-Chr10:6178612 Sed10g1872 Sed-Chr10:35599711 2.10E-35 dispersed
Sed10g1872 Sed-Chr10:35599711 Sed14g0988 Sed-Chr14:19227405 9.00E-34 dispersed
Sed10g1872 Sed-Chr10:35599711 Sed01g4114 Sed-Chr1:70029083 2.80E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29