Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1896 | ATGTCGGATTCCAATTTCCAAGACGTGATGTATGGTTCTGGAGTTATGAACAACGTTGCTCAGGATTTGGAGAATATTCAGACACGAGTTGGGGATGAAGATGATGACGTTAATGGTGGGGAAGAGTCCATTGATAACCCTCAAATGCGATTTGAAGATTCTGGAGGGATGAGCGGCTCTGTCTCGGCGATGAACCAGGATGTCATTCCTTCGGCGTATGTTTCTGGCTCTGATTACAATCCTTTGGCTGGAAACAATGGTGCCGATCAGCTTACGCTGTCGTTTCGAGGGGAGGTTTATGCTTTTGACTCCGTATCGCCGGATAAGGTGCAAGCAGTGCTTTTGCTTTTAGGTGGATATGAAATTTCTTCTGGTGTTCCTGCTGTTGGAAGTGTCCCTATCAACCAACAGGGTGCAGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCGGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAGATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCGAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGAATTGGCTCAAACATTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACATCATGTACACATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCGGGTCCAAGGACTCTGTGCAATGCATGTGGGCTGAAATGGGCTAACAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATTCACGAAACCTCTGTAAAGGAGACTGAACAGAGCGACGGCGAAGCTAATGAATCCGATGTCGCAATTAATGTCGATATTCTGGCAGCAAATAGACCATAA | 912 | 45.61 | MSDSNFQDVMYGSGVMNNVAQDLENIQTRVGDEDDDVNGGEESIDNPQMRFEDSGGMSGSVSAMNQDVIPSAYVSGSDYNPLAGNNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEISSGVPAVGSVPINQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSELAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIHETSVKETEQSDGEANESDVAINVDILAANRP | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35776240 | 35781548 | + | Sed0001654.1 | Sed10g1896 | 728400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1896 | 303 | ProSiteProfiles | CCT domain profile. | 151 | 193 | IPR010402 | GO:0005515(InterPro) | |
Sed10g1896 | 303 | CDD | ZnF_GATA | 222 | 277 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1896 | 303 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 220 | 269 | - | - | |
Sed10g1896 | 303 | MobiDBLite | consensus disorder prediction | 31 | 60 | - | - | |
Sed10g1896 | 303 | ProSiteProfiles | GATA-type zinc finger domain profile. | 222 | 274 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1896 | 303 | SMART | tify_2 | 84 | 119 | IPR010399 | - | |
Sed10g1896 | 303 | Pfam | GATA zinc finger | 223 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1896 | 303 | ProSitePatterns | GATA-type zinc finger domain. | 223 | 250 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1896 | 303 | ProSiteProfiles | Tify domain profile. | 84 | 119 | IPR010399 | - | |
Sed10g1896 | 303 | SMART | GATA_3 | 217 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1896 | 303 | Pfam | tify domain | 89 | 118 | IPR010399 | - | |
Sed10g1896 | 303 | Gene3D | - | 219 | 284 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed10g1896 | 303 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 37 | 291 | IPR045280 | GO:0006355(InterPro) | |
Sed10g1896 | 303 | Pfam | CCT motif | 151 | 193 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0199 | Sed-Chr4:1444974 | Sed10g1896 | Sed-Chr10:35776240 | 5.30E-62 | dispersed | |
Sed04g0200 | Sed-Chr4:1444974 | Sed10g1896 | Sed-Chr10:35776240 | 7.90E-55 | dispersed | |
Sed04g2343 | Sed-Chr4:36945036 | Sed10g1896 | Sed-Chr10:35776240 | 2.40E-54 | dispersed | |
Sed04g2344 | Sed-Chr4:36945036 | Sed10g1896 | Sed-Chr10:35776240 | 1.10E-54 | dispersed | |
Sed06g0793 | Sed-Chr6:8471988 | Sed10g1896 | Sed-Chr10:35776240 | 3.60E-15 | dispersed | |
Sed06g0794 | Sed-Chr6:8489678 | Sed10g1896 | Sed-Chr10:35776240 | 7.20E-74 | dispersed | |
Sed10g1896 | Sed-Chr10:35776240 | Sed10g1898 | Sed-Chr10:35776240 | 2.00E-141 | dispersed | |
Sed10g1896 | Sed-Chr10:35776240 | Sed10g1897 | Sed-Chr10:35776240 | 8.20E-167 | tandem | |
Sed10g1896 | Sed-Chr10:35776240 | Sed06g0792 | Sed-Chr6:8463385 | 1.00E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39842 | PF06203 | CCT | 1.20E-15 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1896 | - | - | - | 0.0 |