Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1897 ATGTCGGATTCCAATTTCCAAGACGTGATGTATGGTTCTGGAGTTATGAACAACGTTGCTCAGGATTTGGAGAATATTCAGACACGAGTTGGGGATGAAGATGATGACGTTAATGGTGGGGAAGAGTCCATTGATAACCCTCAAATGCGATTTGAAGATTCTGGAGGGATGAGCGGCTCTGTCTCGGCGATGAACCAGGATGTCATTCCTTCGGCGTATGTTTCTGGCTCTGATTACAATCCTTTGGCTGGAAACAATGGTGCCGATCAGCTTACGCTGTCGTTTCGAGGGGAGGTTTATGCTTTTGACTCCGTATCGCCGGATAAGGTGCAAGCAGTGCTTTTGCTTTTAGGTGGATATGAAATTTCTTCTGGTGTTCCTGCTGTTGGAAGTGTCCCTATCAACCAACAGGGTGCAGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCGGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAGATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCGAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGAATTGGCTCAAACATTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACATCATGTACACATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCGGGTCCAAGGACTCTGTGCAATGCATGTGGGCTGAAATGGGCTAACAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATTCACGAAACCTCTGTAAAGGAGACTGAACAGAGCGACGGCGAAGCTAATGAATCCGATGTCGCAATTAATGTCGATATTCTGGCAGCAAATAGACCATAA 912 45.61 MSDSNFQDVMYGSGVMNNVAQDLENIQTRVGDEDDDVNGGEESIDNPQMRFEDSGGMSGSVSAMNQDVIPSAYVSGSDYNPLAGNNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEISSGVPAVGSVPINQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSELAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIHETSVKETEQSDGEANESDVAINVDILAANRP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35776240 35781548 + Sed0001654.2 Sed10g1897 728401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1897 303 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515(InterPro)
Sed10g1897 303 CDD ZnF_GATA 222 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1897 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 269 - -
Sed10g1897 303 MobiDBLite consensus disorder prediction 31 60 - -
Sed10g1897 303 ProSiteProfiles GATA-type zinc finger domain profile. 222 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1897 303 SMART tify_2 84 119 IPR010399 -
Sed10g1897 303 Pfam GATA zinc finger 223 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1897 303 ProSitePatterns GATA-type zinc finger domain. 223 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1897 303 ProSiteProfiles Tify domain profile. 84 119 IPR010399 -
Sed10g1897 303 SMART GATA_3 217 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1897 303 Pfam tify domain 89 118 IPR010399 -
Sed10g1897 303 Gene3D - 219 284 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed10g1897 303 PANTHER GATA TRANSCRIPTION FACTOR 28 37 291 IPR045280 GO:0006355(InterPro)
Sed10g1897 303 Pfam CCT motif 151 193 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0792 Sed-Chr6:8463385 Sed10g1897 Sed-Chr10:35776240 4.00E-32 dispersed
Sed10g1897 Sed-Chr10:35776240 Sed05g0366 Sed-Chr5:2417260 1.50E-06 dispersed
Sed10g1896 Sed-Chr10:35776240 Sed10g1897 Sed-Chr10:35776240 8.20E-167 tandem
Sed10g1897 Sed-Chr10:35776240 Sed10g1898 Sed-Chr10:35776240 2.00E-141 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39843 PF06203 CCT 1.20E-15 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1897 - - - 0.0