Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1898 ATGTCGGATTCCAATTTCCAAGACGTGATGTATGGTTCTGGAGTTATGAACAACGTTGCTCAGGATTTGGAGAATATTCAGACACGAGTTGGGGATGAAGATGATGACGTTAATGGTGGGGAAGAGTCCATTGATAACCCTCAAATGCGATTTGAAGATTCTGGAGGGATGAGCGGCTCTGTCTCGGCGATGAACCAGGATGTCATTCCTTCGGCGTATGTTTCTGGCTCTGATTACAATCCTTTGGCTGGAAACAATGGTGCCGATCAGCTTACGCTGTCGTTTCGAGGGGAGGTTTATGCTTTTGACTCCGTATCGCCGGATAAGGTGCAAGCAGTGCTTTTGCTTTTAGGTGGATATGAAATTTCTTCTGGTGTTCCTGCTGTTGGAAGTGTCCCTATCAACCAACAGGGTGCAGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCGGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAGATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCGAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGAATTGGCTCAAACATTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACATCATGTACACATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCGGGTCCAAGGACTCTGTGCAATGCATGTGGGCTGAAATGGGCTAACAAGGTTTGTTTATTAATCTAA 789 45.37 MSDSNFQDVMYGSGVMNNVAQDLENIQTRVGDEDDDVNGGEESIDNPQMRFEDSGGMSGSVSAMNQDVIPSAYVSGSDYNPLAGNNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEISSGVPAVGSVPINQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSELAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKVCLLI 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35776240 35781548 + Sed0001654.3 Sed10g1898 728402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1898 262 CDD ZnF_GATA 222 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 Pfam CCT motif 151 193 IPR010402 GO:0005515(InterPro)
Sed10g1898 262 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515(InterPro)
Sed10g1898 262 Gene3D - 219 259 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed10g1898 262 Pfam tify domain 89 118 IPR010399 -
Sed10g1898 262 PANTHER GATA TRANSCRIPTION FACTOR 28 37 258 IPR045280 GO:0006355(InterPro)
Sed10g1898 262 MobiDBLite consensus disorder prediction 31 60 - -
Sed10g1898 262 Pfam GATA zinc finger 223 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 SMART tify_2 84 119 IPR010399 -
Sed10g1898 262 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 257 - -
Sed10g1898 262 ProSitePatterns GATA-type zinc finger domain. 223 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 ProSiteProfiles Tify domain profile. 84 119 IPR010399 -
Sed10g1898 262 SMART GATA_3 217 262 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1898 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1896 Sed-Chr10:35776240 Sed10g1898 Sed-Chr10:35776240 2.00E-141 dispersed
Sed10g1898 Sed-Chr10:35776240 Sed05g0366 Sed-Chr5:2417260 1.30E-06 dispersed
Sed10g1897 Sed-Chr10:35776240 Sed10g1898 Sed-Chr10:35776240 2.00E-141 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39844 PF06203 CCT 9.40E-16 CL0281 Sed TF