Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1898 | ATGTCGGATTCCAATTTCCAAGACGTGATGTATGGTTCTGGAGTTATGAACAACGTTGCTCAGGATTTGGAGAATATTCAGACACGAGTTGGGGATGAAGATGATGACGTTAATGGTGGGGAAGAGTCCATTGATAACCCTCAAATGCGATTTGAAGATTCTGGAGGGATGAGCGGCTCTGTCTCGGCGATGAACCAGGATGTCATTCCTTCGGCGTATGTTTCTGGCTCTGATTACAATCCTTTGGCTGGAAACAATGGTGCCGATCAGCTTACGCTGTCGTTTCGAGGGGAGGTTTATGCTTTTGACTCCGTATCGCCGGATAAGGTGCAAGCAGTGCTTTTGCTTTTAGGTGGATATGAAATTTCTTCTGGTGTTCCTGCTGTTGGAAGTGTCCCTATCAACCAACAGGGTGCAGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCGGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAGATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCGAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGAATTGGCTCAAACATTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACATCATGTACACATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCGGGTCCAAGGACTCTGTGCAATGCATGTGGGCTGAAATGGGCTAACAAGGTTTGTTTATTAATCTAA | 789 | 45.37 | MSDSNFQDVMYGSGVMNNVAQDLENIQTRVGDEDDDVNGGEESIDNPQMRFEDSGGMSGSVSAMNQDVIPSAYVSGSDYNPLAGNNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEISSGVPAVGSVPINQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSELAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKVCLLI | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35776240 | 35781548 | + | Sed0001654.3 | Sed10g1898 | 728402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1898 | 262 | CDD | ZnF_GATA | 222 | 257 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1898 | 262 | Pfam | CCT motif | 151 | 193 | IPR010402 | GO:0005515(InterPro) | |
Sed10g1898 | 262 | ProSiteProfiles | CCT domain profile. | 151 | 193 | IPR010402 | GO:0005515(InterPro) | |
Sed10g1898 | 262 | Gene3D | - | 219 | 259 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed10g1898 | 262 | Pfam | tify domain | 89 | 118 | IPR010399 | - | |
Sed10g1898 | 262 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 37 | 258 | IPR045280 | GO:0006355(InterPro) | |
Sed10g1898 | 262 | MobiDBLite | consensus disorder prediction | 31 | 60 | - | - | |
Sed10g1898 | 262 | Pfam | GATA zinc finger | 223 | 257 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1898 | 262 | SMART | tify_2 | 84 | 119 | IPR010399 | - | |
Sed10g1898 | 262 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 220 | 257 | - | - | |
Sed10g1898 | 262 | ProSitePatterns | GATA-type zinc finger domain. | 223 | 250 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g1898 | 262 | ProSiteProfiles | Tify domain profile. | 84 | 119 | IPR010399 | - | |
Sed10g1898 | 262 | SMART | GATA_3 | 217 | 262 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1896 | Sed-Chr10:35776240 | Sed10g1898 | Sed-Chr10:35776240 | 2.00E-141 | dispersed | |
Sed10g1898 | Sed-Chr10:35776240 | Sed05g0366 | Sed-Chr5:2417260 | 1.30E-06 | dispersed | |
Sed10g1897 | Sed-Chr10:35776240 | Sed10g1898 | Sed-Chr10:35776240 | 2.00E-141 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39844 | PF06203 | CCT | 9.40E-16 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1898 | - | - | - | 0.0 |