Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1898 ATGTCGGATTCCAATTTCCAAGACGTGATGTATGGTTCTGGAGTTATGAACAACGTTGCTCAGGATTTGGAGAATATTCAGACACGAGTTGGGGATGAAGATGATGACGTTAATGGTGGGGAAGAGTCCATTGATAACCCTCAAATGCGATTTGAAGATTCTGGAGGGATGAGCGGCTCTGTCTCGGCGATGAACCAGGATGTCATTCCTTCGGCGTATGTTTCTGGCTCTGATTACAATCCTTTGGCTGGAAACAATGGTGCCGATCAGCTTACGCTGTCGTTTCGAGGGGAGGTTTATGCTTTTGACTCCGTATCGCCGGATAAGGTGCAAGCAGTGCTTTTGCTTTTAGGTGGATATGAAATTTCTTCTGGTGTTCCTGCTGTTGGAAGTGTCCCTATCAACCAACAGGGTGCAGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCGGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAGATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCGAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGAATTGGCTCAAACATTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACATCATGTACACATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCGGGTCCAAGGACTCTGTGCAATGCATGTGGGCTGAAATGGGCTAACAAGGTTTGTTTATTAATCTAA 789 45.37 MSDSNFQDVMYGSGVMNNVAQDLENIQTRVGDEDDDVNGGEESIDNPQMRFEDSGGMSGSVSAMNQDVIPSAYVSGSDYNPLAGNNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEISSGVPAVGSVPINQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSELAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKVCLLI 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35776240 35781548 + Sed0001654.3 Sed10g1898 728402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1898 262 CDD ZnF_GATA 222 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 Pfam CCT motif 151 193 IPR010402 GO:0005515(InterPro)
Sed10g1898 262 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515(InterPro)
Sed10g1898 262 Gene3D - 219 259 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed10g1898 262 Pfam tify domain 89 118 IPR010399 -
Sed10g1898 262 PANTHER GATA TRANSCRIPTION FACTOR 28 37 258 IPR045280 GO:0006355(InterPro)
Sed10g1898 262 MobiDBLite consensus disorder prediction 31 60 - -
Sed10g1898 262 Pfam GATA zinc finger 223 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 SMART tify_2 84 119 IPR010399 -
Sed10g1898 262 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 257 - -
Sed10g1898 262 ProSitePatterns GATA-type zinc finger domain. 223 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g1898 262 ProSiteProfiles Tify domain profile. 84 119 IPR010399 -
Sed10g1898 262 SMART GATA_3 217 262 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1896 Sed-Chr10:35776240 Sed10g1898 Sed-Chr10:35776240 2.00E-141 dispersed
Sed10g1898 Sed-Chr10:35776240 Sed05g0366 Sed-Chr5:2417260 1.30E-06 dispersed
Sed10g1897 Sed-Chr10:35776240 Sed10g1898 Sed-Chr10:35776240 2.00E-141 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39844 PF06203 CCT 9.40E-16 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1898 - - - 0.0