Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1925 ATGGAGACATCTTCTATGGTGGTGTTTTCTGATATGGGAATGGAGGATAATGGCTTTGTTAATCAATGGCACAAGAGCTCAACGGATGAGCTTGGCATACTCCCATTAGCATCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCACAATCCCATATTTGGGTGTGGGAAACAGCTCAAAACTGGTGGGTGGAGTTCATACCAAACAACTAACCATTTGCTAAACTCACAAGTCATTGCTTATCCGACCGAGTCTGTTTCGGCTTCCAACTACACAAACCAAATGAACTTCACAAGGCCGAAAGAGGAGGTTGTGTGTCCTCAGAGTATGAGCAATGCCCCTTCAGATATGTTGATCACTGAGGGCTCATTATGCCACCAAAGCCATGTAACCAAGTCCTACCGTGGTATGAAACGGACCGCTACAAACAGTAGATTCCCCCAGGCTCAAGATCACGTTCTTGCAGAGAGGAAACGGCGTGAGAAGCTCAGCCAGCGGTTTATCGCTTTGTCCGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTACAGTTCTTGGAGATGCCATTAAGTACCTAAAACAACTCCAGGAGAAAGTGAAGATACTAGAGGAACAAAATCGCAAGAAAGACATCGAATCCGTGGTAGTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACGTTGAAAGAAGAGGACGTGTCACTGCCGGAGATCGAAGCTAGATTCTGTGACAAAAGTGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCATAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTAACAATAGTCAACACTGGTGTTATGTCATTTGGGAGTCTTGCCCTTGATATAACCATTATTGCTCAGGTAATAACTATACTTTGA 951 43.32 METSSMVVFSDMGMEDNGFVNQWHKSSTDELGILPLASAFGENLQHSYAQTNLDQKASSNHSHNPIFGCGKQLKTGGWSSYQTTNHLLNSQVIAYPTESVSASNYTNQMNFTRPKEEVVCPQSMSNAPSDMLITEGSLCHQSHVTKSYRGMKRTATNSRFPQAQDHVLAERKRREKLSQRFIALSAIVPGLKKMDKATVLGDAIKYLKQLQEKVKILEEQNRKKDIESVVVVKKSQVFADGNNTLKEEDVSLPEIEARFCDKSVLIRIHCEKKKDVIEKTIAEIEKLHLTIVNTGVMSFGSLALDITIIAQVITIL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35950370 35953145 + Sed0024556.3 Sed10g1925 728429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1925 316 Coils Coil 200 227 - -
Sed10g1925 316 CDD bHLH_AtNAI1_like 163 227 - -
Sed10g1925 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
Sed10g1925 316 Gene3D - 159 233 IPR036638 GO:0046983(InterPro)
Sed10g1925 316 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Sed10g1925 316 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
Sed10g1925 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Sed10g1925 316 PANTHER BHLH TRANSCRIPTION FACTOR 13 312 IPR052610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1925 Sed-Chr10:35950370 Sed10g1927 Sed-Chr10:35950574 1.70E-175 dispersed
Sed10g1924 Sed-Chr10:35950370 Sed10g1925 Sed-Chr10:35950370 1.70E-173 tandem
Sed10g1925 Sed-Chr10:35950370 Sed10g1926 Sed-Chr10:35950574 1.60E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39846 PF00010 HLH 5.10E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1925 - - - 0.0