Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1926 | ATGGAGACATCTTCTATGGTGGTGTTTTCTGATATGGGAATGGAGGATAATGGCTTTGTTAATCAATGGCACAAGAGCTCAACGGATGAGCTTGGCATACTCCCATTAGCATCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCACAATCCCATATTTGGGTGTGGGAAACAGCTCAAAACTGGTGGGTGGAGTTCATACCAAACAACTAACCATTTGCTAAACTCACAAGTCATTGCTTATCCGACCGAGTCTGTTTCGGCTTCCAACTACACAAACCAAATGAACTTCACAAGGCCGAAAGAGGAGGTTGTGTGTCCTCAGAGTATGAGCAATGCCCCTTCAGATATGTTGATCACTGAGGGCTCATTATGCCACCAAAGCCATGTAACCAAGTCCTACCGTGGTATGAAACGGACCGCTACAAACAGTAGATTCCCCCAGGCTCAAGATCACGTTCTTGCAGAGAGGAAACGGCGTGAGAAGCTCAGCCAGCGGTTTATCGCTTTGTCCGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTACAGTTCTTGGAGATGCCATTAAGTACCTAAAACAACTCCAGGAGAAAGTGAAGATACTAGAGGAACAAAATCGCAAGAAAGACATCGAATCCGTGGTAGTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACGTTGAAAGAAGAGGACGTGTCACTGCCGGAGATCGAAGCTAGATTCTGTGACAAAAGTGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCATAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTAACAATAGTCAACACTGGTGTTATGTCATTTGGGAGTCTTGCCCTTGATATAACCATTATTGCTCAGATGGATGACGAATTCCGTTTATCGCTAAACGACCTCGTGAAGAAGTTGCAGTCAACTTTCCGCTCGTTCCAACAATAA | 1011 | 43.72 | METSSMVVFSDMGMEDNGFVNQWHKSSTDELGILPLASAFGENLQHSYAQTNLDQKASSNHSHNPIFGCGKQLKTGGWSSYQTTNHLLNSQVIAYPTESVSASNYTNQMNFTRPKEEVVCPQSMSNAPSDMLITEGSLCHQSHVTKSYRGMKRTATNSRFPQAQDHVLAERKRREKLSQRFIALSAIVPGLKKMDKATVLGDAIKYLKQLQEKVKILEEQNRKKDIESVVVVKKSQVFADGNNTLKEEDVSLPEIEARFCDKSVLIRIHCEKKKDVIEKTIAEIEKLHLTIVNTGVMSFGSLALDITIIAQMDDEFRLSLNDLVKKLQSTFRSFQQ | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35950574 | 35953850 | + | Sed0024556.2 | Sed10g1926 | 728430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1926 | 336 | Coils | Coil | 200 | 227 | - | - | |
Sed10g1926 | 336 | CDD | bHLH_AtNAI1_like | 163 | 227 | - | - | |
Sed10g1926 | 336 | Pfam | Helix-loop-helix DNA-binding domain | 165 | 211 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1926 | 336 | SMART | finulus | 167 | 216 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1926 | 336 | Gene3D | - | 159 | 233 | IPR036638 | GO:0046983(InterPro) | |
Sed10g1926 | 336 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 223 | IPR036638 | GO:0046983(InterPro) | |
Sed10g1926 | 336 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 210 | IPR011598 | GO:0046983(InterPro) | |
Sed10g1926 | 336 | PANTHER | BHLH TRANSCRIPTION FACTOR | 13 | 332 | IPR052610 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1924 | Sed-Chr10:35950370 | Sed10g1926 | Sed-Chr10:35950574 | 9.30E-188 | dispersed | |
Sed10g1926 | Sed-Chr10:35950574 | Sed14g0974 | Sed-Chr14:18972053 | 2.90E-32 | dispersed | |
Sed10g1925 | Sed-Chr10:35950370 | Sed10g1926 | Sed-Chr10:35950574 | 1.60E-173 | tandem | |
Sed10g1926 | Sed-Chr10:35950574 | Sed10g1927 | Sed-Chr10:35950574 | 1.70E-173 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39847 | PF00010 | HLH | 5.50E-10 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1926 | - | - | - | 0.0 |