Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1926 ATGGAGACATCTTCTATGGTGGTGTTTTCTGATATGGGAATGGAGGATAATGGCTTTGTTAATCAATGGCACAAGAGCTCAACGGATGAGCTTGGCATACTCCCATTAGCATCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCACAATCCCATATTTGGGTGTGGGAAACAGCTCAAAACTGGTGGGTGGAGTTCATACCAAACAACTAACCATTTGCTAAACTCACAAGTCATTGCTTATCCGACCGAGTCTGTTTCGGCTTCCAACTACACAAACCAAATGAACTTCACAAGGCCGAAAGAGGAGGTTGTGTGTCCTCAGAGTATGAGCAATGCCCCTTCAGATATGTTGATCACTGAGGGCTCATTATGCCACCAAAGCCATGTAACCAAGTCCTACCGTGGTATGAAACGGACCGCTACAAACAGTAGATTCCCCCAGGCTCAAGATCACGTTCTTGCAGAGAGGAAACGGCGTGAGAAGCTCAGCCAGCGGTTTATCGCTTTGTCCGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTACAGTTCTTGGAGATGCCATTAAGTACCTAAAACAACTCCAGGAGAAAGTGAAGATACTAGAGGAACAAAATCGCAAGAAAGACATCGAATCCGTGGTAGTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACGTTGAAAGAAGAGGACGTGTCACTGCCGGAGATCGAAGCTAGATTCTGTGACAAAAGTGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCATAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTAACAATAGTCAACACTGGTGTTATGTCATTTGGGAGTCTTGCCCTTGATATAACCATTATTGCTCAGATGGATGACGAATTCCGTTTATCGCTAAACGACCTCGTGAAGAAGTTGCAGTCAACTTTCCGCTCGTTCCAACAATAA 1011 43.72 METSSMVVFSDMGMEDNGFVNQWHKSSTDELGILPLASAFGENLQHSYAQTNLDQKASSNHSHNPIFGCGKQLKTGGWSSYQTTNHLLNSQVIAYPTESVSASNYTNQMNFTRPKEEVVCPQSMSNAPSDMLITEGSLCHQSHVTKSYRGMKRTATNSRFPQAQDHVLAERKRREKLSQRFIALSAIVPGLKKMDKATVLGDAIKYLKQLQEKVKILEEQNRKKDIESVVVVKKSQVFADGNNTLKEEDVSLPEIEARFCDKSVLIRIHCEKKKDVIEKTIAEIEKLHLTIVNTGVMSFGSLALDITIIAQMDDEFRLSLNDLVKKLQSTFRSFQQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35950574 35953850 + Sed0024556.2 Sed10g1926 728430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1926 336 Coils Coil 200 227 - -
Sed10g1926 336 CDD bHLH_AtNAI1_like 163 227 - -
Sed10g1926 336 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
Sed10g1926 336 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Sed10g1926 336 Gene3D - 159 233 IPR036638 GO:0046983(InterPro)
Sed10g1926 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
Sed10g1926 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Sed10g1926 336 PANTHER BHLH TRANSCRIPTION FACTOR 13 332 IPR052610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1924 Sed-Chr10:35950370 Sed10g1926 Sed-Chr10:35950574 9.30E-188 dispersed
Sed10g1926 Sed-Chr10:35950574 Sed14g0974 Sed-Chr14:18972053 2.90E-32 dispersed
Sed10g1925 Sed-Chr10:35950370 Sed10g1926 Sed-Chr10:35950574 1.60E-173 tandem
Sed10g1926 Sed-Chr10:35950574 Sed10g1927 Sed-Chr10:35950574 1.70E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39847 PF00010 HLH 5.50E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1926 - - - 0.0