Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1929 ATGAAAATTCCGCCACTCCTCGCCGGAAAACCCCTCCGCCGCCGCACTCCGGCGGCGCTCCTCCTCCTCCTCCTCCTCTGCTTCATCCCCATCTTCCAAGCCAATGAGCTTCACCCACTTTTGGCCCTAAAATCTTCCCTCCACCATCAACAAAACTCCTCAATTCTTAGCTCTTGGATTTCAGGCGAAGATGTTTGCAGCAGCTTCCATGGAGTTTTGTGTAATTCCAATGGCTCTGTTCTTGAAATCAATCTTTCTTCCCAAAACTTATCTGGGGTTCTTCCTTTTGGTTCAATTTGTTCTTTGAAATCTCTTGAGAGGCTGGATTTTGGGTTTAATTCTTTGTATGGGGAAGTGGGTGATGATTTGAGGAACTGTTCTAAGTTGAGGCATTTGGATTTGGGTGAGAATTTGTTTTCTGGTCAAGTTCCTGATTTGTCTTCTTTGAAGGAATTGAGGTTTTTGAGTTTGAATAACAGTGGGTTTTCTGGAGATTTTCCATGGAAATCTCTTCTCAATCTTACTGATTTGGTGTTTTTGAGCCTTGGGGATAACTCATTTAACCCAACAAGTTCTTTCCCTTTGGAGATTCTTGAGCTCAAGAAGCTTTATTGGCTTTACCTTTCTAACTGCACCATTCATGGTGAAATCCCACCTGGGATTGGGAATTTATCTCTGCTTGAGAATCTTGAGCTCTCACAGAATGGACTTACAGGTGGGATTCCTTCTGAGATTGTGAACTTGAAGAAGCTATGGCAGTTGGAGTTACACGAGAATTCGCTAACCGGGAAGCTCCCGGTCGGGTTCGGTAACCTTACTGGACTGAGGATGTTTGATGCTTCTAGTAATGATCTTGATGGTGATCTTATGGAGTTGAGGTTCTTGACCAATTTGGAGTCCTTGCAGCTCTTTCAAAACCGATTTACCGGGACGATTCCGGAGGAGTTCGGGGACTTTAAGAAGCTTGCTGGATTGTCTCTTTACCAGAACAAGCTCACGGGGAGCCTCCCTCAAAGAATTGGATCTTGGGCTGCTTTCATTTTCATTGATGTTTCTGAGAACTTTCTGTCTGGACCTATACCTCCAGGCATGTGCAAGCAGGGCAGTATGGTTGAGCTCCTGATGCTGCAAAACAAATTCATTGGCGGAATCCCGGAGAGCTATACGAAATGTACATCTTTGAAACGATTTCTTGTGAAAAATAATTCTCTTTCGGGTGTCGTTCCATCCGGGATTTGGAGTCTGCCGAATCTTAGGATCGTTGATCTTTCTATGAATCAGTTTGAAGGTCCTGTCACTTCAGATATTGGTAAGGCAAAAGCTCTTGCCCAGTTGTTCTTATCGAATAACCGGTTTTCTGGAAACTTACCAGCCGAGCTTGGCGAAGCATCGTCCTTAGTGTCGATCCAGCTCGATTCCAACCAATTTATTGGACCATTACCAGAATCACTTGGCAAGTTGAAGGTCTTGGGCAGCCTTTCTTTGAATGACAACAAGTTTTCTAACAACATTCCTAGCTCATTAGGCTCTTGCACTTCTCTTTCTACCATAAATCTAGCGAGGAATTCGTTTTCCGGGGATATTCCTGAGAATCTTGGACATTTGCCAATTCTAAACACCTTAAATCTGTCGAACAATGAACTTTCGGGGGAAATTCCAATGAGTTTTTCGCACTTGAAGCTAAGCAGTTTTGACGTATCGAACAACAAGTTAGTTGGCGAAGTACCTGAATCGCTAGCAATACAAGTCTTTGATGAGAGTTTCATGGGAAATCCAGGCTTGTGCAGTCAGTCTCTCAAATACTTGAATTCATGTTCATCCATCTCTAGACCATCCAGCCATCTCAAAACATTGTTGTCATGTACCATTGCTGGAATCTTCATGTTGCTCATGTCCTTCTCGTGCTTGTTGTTTGTTAAATTGAAGCGTCACGATGCTAAGCATTTACTGAAAGCTAGATCGTGGGATATGAAGTCGTTCCACAGATTGAGCTTCACGGAAAAGGAAATCCTTGATTCATTAAGTTCTAAGAACTTAATAGGCAAAGGAGGATCTGGAAATGTATACAAAGCTGCACTAAGTAATGGCAAAGAACTCGCCGTAAAACATATATGGCAGTCAGGTTCCATGGACCAAACAAATTATCGAACAAGCGCAACTATGCTAACCAAAAGAAAGACCAGGTCATCCGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATGTCAATGTGGTGAAACTATACTGTAGCATTTCAAGCGAGGATAGCAATCTGTTGGTTTACGAGTACTTACCCAATGGAAGTTTATGGGATCAGCTGCACACTAACAGGAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTTGCGGTTGGAGCAGCGAGGGGACTTGAATATTTGCATCACGGGTGTGACCGGCCTGTGATTCATCGAGATGTGAAGTCGAGTAATATTTTGTTGGACAATGATTGGAAGCCAAGGATTGCAGATTTTGGGCTAGCTAAGATCCTGCGGGATGACTATGGGAGTGGAGATTCGTCTCATGTCATTGCTGGAACACTTGGTTATCTAGCCCCAGAATATGCCTACACGTGCAAGATAAACGAGAAGAGCGACGTCTACAGCTTCGGAGTAGTCCTAATGGAACTAGTAACAGGAAAGAAGCCAAATGAGCCAGAGTTTGGGGAGAACAGAGACATTGTACAGTGGGCACACGGCAGAATGAGAGACCTAAAAGGCGATCTCAAAGACATGGTAGATCCTATCATTTCGGAGGCTCAGGTGGAAGATGCAGTCATAGTGTTGAGAATCGCACTTCGTTGCACGGCTAAGATTCCGTCCACAAGGCCCTCAATGAGAATGGTTGTTCATATGCTTGAAGAGGCTGAACCTTACAACCTCATTGACATTGTTGTCAAGAAAGAATGTGAAAAGTAA 2946 43.79 MKIPPLLAGKPLRRRTPAALLLLLLLCFIPIFQANELHPLLALKSSLHHQQNSSILSSWISGEDVCSSFHGVLCNSNGSVLEINLSSQNLSGVLPFGSICSLKSLERLDFGFNSLYGEVGDDLRNCSKLRHLDLGENLFSGQVPDLSSLKELRFLSLNNSGFSGDFPWKSLLNLTDLVFLSLGDNSFNPTSSFPLEILELKKLYWLYLSNCTIHGEIPPGIGNLSLLENLELSQNGLTGGIPSEIVNLKKLWQLELHENSLTGKLPVGFGNLTGLRMFDASSNDLDGDLMELRFLTNLESLQLFQNRFTGTIPEEFGDFKKLAGLSLYQNKLTGSLPQRIGSWAAFIFIDVSENFLSGPIPPGMCKQGSMVELLMLQNKFIGGIPESYTKCTSLKRFLVKNNSLSGVVPSGIWSLPNLRIVDLSMNQFEGPVTSDIGKAKALAQLFLSNNRFSGNLPAELGEASSLVSIQLDSNQFIGPLPESLGKLKVLGSLSLNDNKFSNNIPSSLGSCTSLSTINLARNSFSGDIPENLGHLPILNTLNLSNNELSGEIPMSFSHLKLSSFDVSNNKLVGEVPESLAIQVFDESFMGNPGLCSQSLKYLNSCSSISRPSSHLKTLLSCTIAGIFMLLMSFSCLLFVKLKRHDAKHLLKARSWDMKSFHRLSFTEKEILDSLSSKNLIGKGGSGNVYKAALSNGKELAVKHIWQSGSMDQTNYRTSATMLTKRKTRSSEYDAEVATLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTNRKIEMGWQIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDNDWKPRIADFGLAKILRDDYGSGDSSHVIAGTLGYLAPEYAYTCKINEKSDVYSFGVVLMELVTGKKPNEPEFGENRDIVQWAHGRMRDLKGDLKDMVDPIISEAQVEDAVIVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNLIDIVVKKECEK 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35970618 35974152 + Sed0015822.1 Sed10g1929 728433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1929 981 Pfam Protein kinase domain 676 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1929 981 Pfam Leucine Rich Repeat 513 535 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 Pfam Leucine Rich Repeat 538 559 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 SUPERFAMILY Protein kinase-like (PK-like) 663 963 IPR011009 -
Sed10g1929 981 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515(InterPro)
Sed10g1929 981 Gene3D Transferase(Phosphotransferase) domain 1 767 975 - -
Sed10g1929 981 FunFam Receptor-like protein kinase HAIKU2 657 766 - -
Sed10g1929 981 Gene3D Ribonuclease Inhibitor 367 602 IPR032675 -
Sed10g1929 981 FunFam Probable inactive receptor kinase RLK902 33 193 - -
Sed10g1929 981 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Sed10g1929 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 965 IPR050647 -
Sed10g1929 981 FunFam Receptor-like protein kinase HSL1 297 604 - -
Sed10g1929 981 Gene3D Phosphorylase Kinase; domain 1 656 766 - -
Sed10g1929 981 SUPERFAMILY L domain-like 193 431 - -
Sed10g1929 981 ProSiteProfiles Protein kinase domain profile. 674 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1929 981 SUPERFAMILY RNI-like 370 594 - -
Sed10g1929 981 ProSitePatterns Protein kinases ATP-binding region signature. 680 702 IPR017441 GO:0005524(InterPro)
Sed10g1929 981 SMART serkin_6 674 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1929 981 SUPERFAMILY L domain-like 37 203 - -
Sed10g1929 981 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Sed10g1929 981 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Sed10g1929 981 FunFam Leucine-rich repeat receptor-like protein kinase 767 977 - -
Sed10g1929 981 Gene3D Ribonuclease Inhibitor 292 366 IPR032675 -
Sed10g1929 981 FunFam Leucine-rich receptor-like protein kinase family protein 194 291 - -
Sed10g1929 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1526 Sed-Chr5:28971845 Sed10g1929 Sed-Chr10:35970618 1.00E-149 dispersed
Sed10g1929 Sed-Chr10:35970618 Sed14g1490 Sed-Chr14:23242860 6.90E-82 dispersed
Sed10g1929 Sed-Chr10:35970618 Sed05g1525 Sed-Chr5:28939541 8.70E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79870 PF00069 Pkinase 1.10E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1929 - - - 0.0