Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1931 ATGGAGGAGAATCAAGCTGTGAAGTTCGCTAGCGACGATTTCTACGAGATGATCGAAGCGCCTAAGTTCGTCGACTTCACCGTTTCCGATCGCTGCATTCCCGATGATCGCTTCTGGTTCTGCTCCCGAGTCGGGTGTGAAGAGAATCATCCAGAAGAAATGGACTCAGACGTCGTTTTCAAAAACTTTGTTATGCGGGTAATGGCGGCAAGGAGTCCGAATGTACGGCTTCAGAGAGCTCGAAGGAACTTGAAATGCCCACTTACAGCTCCTCCAAAGTCTTCAAAGTCTAGAGTGACCAGACTAGCTCTGATATCTTCCATCTCTAAACGGATAGTGGATGCAAGAGTGAAATATAGACCGTGTATTGCGAAGCCGACTCCGAATGCAAAACCTAAACAAGCTCATGTTAAGGCAATGACAACTCCAAGGAACAGGAAGCTTAACTCAAATGCCAACGCTTTTCTGAGTGCTAAAAATCCTAAGACCATATCTTCTGAAGTGCCCAAGACTACTACGGTAGCCAAGGCTTTGGTCTTTCAATCTCCCATGAAAGCTACCAAAAAGAAAACTTCAATAGAAATGAATACCCCTGTGAAAACTTTATGTGCAGCAATGAAGAAACTTGAGATTGCAAGTGCAAAGAAGAATGTCCTAGGGGATGGACAACCATTGCCCCTAGATCCTTCAAGGAAGAAGTTAAAAGGACGTGAGGTTAAGAGCCGGGTTTTTGATTCTTTAAGATCTCACAGTTGCAAACGTCAGGATGCCAAATCTGCAAGAGTTTTGAAGAGGAAAAGCAAAGAAAAGAACTTAAAGCCACCTCTTCCTGATCATATGACCCAAGAAATTGTTGAGGATGCTAGTGACATGGATATTGATGATAAATCAAGGCATGTTTCATTGCAAGGGTGCTCTCTATCAAGTTCTGCTAAGAGTTCTGAAGGAAATCAATATGAACTTTCGAACTCTGAAGATACGGATAATCTGTCCAAAGACTCCCATGGAACTTCAACTTCAAATTCTGAAGAGACAATTTCGAATAAAAGTGACTTTGAGGTAGTTCTATGTGAGGTGGAGGACCAGAAGTACCAGGAAAACGATCATGAAGAGATAGCAAAAACAGGAGCATTAGAGACGAATATTTCAGGAATTATGGAGAGTGGAAATAAGGAAAATGTAGCTGAGATTAGTGAAGGTAATCAAGACGAAAAGGATCAGAAGAATACAGAAATTTCGGAGCCTCTGAACGAAAATAAATATAATGTGTCCAAAAACTCTAAGGATGATGAGACTTCAATAACAAACCCAGAAGAGAAAAAATCAGAAACAAGTGATTTCAAATCAGTTCTGTATGAAAAGGAGACTCATGATTGCAATCGTGGACAAAGAATGAAATCAGGGGAAATACAGATGAATATCTCAGAACATGATGAGAGTGATAATAAAGAAAATATAGCGACTGTAGAAAAGGAAAACACAATGACCTCTGATGATGATATAGAGCATGAAAGTGAAACCACCACAAATGAAAATGTTGTTCATAATGACAACAGGGGAAACAATTCATACCAGTCTGAAAGAGTGCCATTTGGAAAGCTTGAGAAATCTAAAAGTACAGCAAAGGTCAAGGGAATGTCGAAGAAAACTCTAAAAGAGAATTCAACCCCTGCTGCGGTTTGTTCTCTTGGGCTGAAATCCAGCAGACCGAAGACCACGAATCCGAAGCCATTCAGGCTAAGAACTGATGAAAGAGTTGTACTAAGGGAAGCAAACTTGGGGAAAAAGCTTGATTGTCCTTTGAAAGATATCACTGCATCTAGAAGGTTTCATGTGGATAAGAAGCAGAGAAAAAAGCAATCAACGAACCAAGTGAGTTTTTTCATAAAAAATTTCAACCCTCACCCCCATTCCGGGTAG 1920 40.73 MEENQAVKFASDDFYEMIEAPKFVDFTVSDRCIPDDRFWFCSRVGCEENHPEEMDSDVVFKNFVMRVMAARSPNVRLQRARRNLKCPLTAPPKSSKSRVTRLALISSISKRIVDARVKYRPCIAKPTPNAKPKQAHVKAMTTPRNRKLNSNANAFLSAKNPKTISSEVPKTTTVAKALVFQSPMKATKKKTSIEMNTPVKTLCAAMKKLEIASAKKNVLGDGQPLPLDPSRKKLKGREVKSRVFDSLRSHSCKRQDAKSARVLKRKSKEKNLKPPLPDHMTQEIVEDASDMDIDDKSRHVSLQGCSLSSSAKSSEGNQYELSNSEDTDNLSKDSHGTSTSNSEETISNKSDFEVVLCEVEDQKYQENDHEEIAKTGALETNISGIMESGNKENVAEISEGNQDEKDQKNTEISEPLNENKYNVSKNSKDDETSITNPEEKKSETSDFKSVLYEKETHDCNRGQRMKSGEIQMNISEHDESDNKENIATVEKENTMTSDDDIEHESETTTNENVVHNDNRGNNSYQSERVPFGKLEKSKSTAKVKGMSKKTLKENSTPAAVCSLGLKSSRPKTTNPKPFRLRTDERVVLREANLGKKLDCPLKDITASRRFHVDKKQRKKQSTNQVSFFIKNFNPHPHSG 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35974540 35979645 - Sed0010536.2 Sed10g1931 728435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1931 639 PANTHER NEUROFILAMENT HEAVY PROTEIN 418 622 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 397 413 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 621 639 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 511 528 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 471 510 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 333 349 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 612 639 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 364 555 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 301 325 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 219 280 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 228 258 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 423 464 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 531 549 - -
Sed10g1931 639 MobiDBLite consensus disorder prediction 296 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1931 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1930 Sed-Chr10:35974540 Sed10g1931 Sed-Chr10:35974540 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35