Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1946 | ATGAGAGGACACAATTCTCACCCTCAGAAGCCAGGTTTCGCCAGACCCGAAGACGAAGCCGAACCGGTTCGCTCTTTTCTCCCCGGAACCAACGCTCCAATAGGCGCCGGAATTCGGAAGAAGGGGACCGGAGTCCGGACATGGCTGCTCCTCGACTCGACCGGCGGAGCTCAGGTTGTTGAGGCCGGAAAGCACGCCATTATGCGGCGGACCGGTTTGCCGGCGCGGGATCTCCGGATCCTGGATCCGTTGCTCTCGTATCCGTCTACTGTTCTAGGGCGTGAGCGAGCGATTGTGATCAATTTGGAGCATATCAAAGCCATCATCACCGCTCAAGATGTGTTCGTGTTGAATGCTAAGGATCCGTCTGTAATCCCCTTTGTCGAGAAGCTTCAGCGCCGGGTGATGCGGCACCACCAAGCCACTAAGGCCGCTCAGGAGGGCAATGGTTATGATTCTAGTTGGAGAAATCTGTATGACTTGGAGGAGCCACGATCGAGGGCTCAAAGTCCTCGTAATCCCTACGAAGGATTTCCACAGGACGAAGAGGAGGGGAAGGAGAGCGGAAAACAAGGTCTCGAAAATCAGGAGGGATTGAAGGTTCTTCCATTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCCTGCACTTGCTTAGAAAGTGAAGCAGATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTAACTTCTAAAATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGATGAATTAGAGCACTTGCTAGATGATGATGAGGATATGGCTGAAATGTACTTAACAGAGAAGATGGTTCAACAACAGCTTGAGACCTCTTCCACTTCTTCGATTCCCGAAAGAGATGAAACGGACACTGAAGTTCAGCGATTAGGCACCGATGACACTCTTCCTGCTGAAATATCATTGGAAGGTGGTGGAATTTCTGGTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGTAGGGAGAGCCACGGGAGCCGGACAAGCACTACCTATAGCGCTATAAGCAAGCACCTCGATGTCGAGGAGCTCGAGATGCTGTTGGAGGCATACTTTGTGCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAGCAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACAGCAACCCTTGTCGTGAGCGCTTTCGTGGTGGTGGCGGGTATCTTCGGGATGAACATCCATATCGAACTGTTTGAACCGGAAAAAGCAGGCATGCCGGAGTTCCTGTGGACTGTTGGTGGCAGTGCTACTGGAACCATCATCTTGTATGTTATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTCGAGTAG | 1485 | 49.83 | MRGHNSHPQKPGFARPEDEAEPVRSFLPGTNAPIGAGIRKKGTGVRTWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQDVFVLNAKDPSVIPFVEKLQRRVMRHHQATKAAQEGNGYDSSWRNLYDLEEPRSRAQSPRNPYEGFPQDEEEGKESGKQGLENQEGLKVLPFEFVALEACLEAACTCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLETSSTSSIPERDETDTEVQRLGTDDTLPAEISLEGGGISGNYEGNMDASQDHLFGASNVGRESHGSRTSTTYSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFLWTVGGSATGTIILYVIAIAWCKHKRLLE | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36189412 | 36193893 | + | Sed0024052.1 | Sed10g1946 | 728450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1946 | 494 | Gene3D | Magnesium transport protein CorA, transmembrane region | 156 | 422 | - | - | |
Sed10g1946 | 494 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed10g1946 | 494 | MobiDBLite | consensus disorder prediction | 163 | 191 | - | - | |
Sed10g1946 | 494 | MobiDBLite | consensus disorder prediction | 293 | 313 | - | - | |
Sed10g1946 | 494 | Pfam | Magnesium transporter MRS2-like | 199 | 293 | - | - | |
Sed10g1946 | 494 | Pfam | Magnesium transporter MRS2-like | 53 | 135 | - | - | |
Sed10g1946 | 494 | Pfam | Magnesium transporter MRS2-like | 372 | 417 | - | - | |
Sed10g1946 | 494 | Gene3D | - | 36 | 119 | - | - | |
Sed10g1946 | 494 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
Sed10g1946 | 494 | CDD | Mrs2_Mfm1p-like | 48 | 492 | IPR039204 | - | |
Sed10g1946 | 494 | FunFam | Magnesium transporter MRS2-1 | 36 | 119 | - | - | |
Sed10g1946 | 494 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 35 | 492 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1392 | Sed-Chr5:26967057 | Sed10g1946 | Sed-Chr10:36189412 | 7.70E-89 | dispersed | |
Sed06g2048 | Sed-Chr6:44545785 | Sed10g1946 | Sed-Chr10:36189412 | 2.70E-89 | dispersed | |
Sed10g1946 | Sed-Chr10:36189412 | Sed13g0547 | Sed-Chr13:3768900 | 2.00E-74 | dispersed | |
Sed10g1946 | Sed-Chr10:36189412 | Sed05g2636 | Sed-Chr5:37936720 | 3.10E-248 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1946 | - | - | - | 0.0 |