Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1946 ATGAGAGGACACAATTCTCACCCTCAGAAGCCAGGTTTCGCCAGACCCGAAGACGAAGCCGAACCGGTTCGCTCTTTTCTCCCCGGAACCAACGCTCCAATAGGCGCCGGAATTCGGAAGAAGGGGACCGGAGTCCGGACATGGCTGCTCCTCGACTCGACCGGCGGAGCTCAGGTTGTTGAGGCCGGAAAGCACGCCATTATGCGGCGGACCGGTTTGCCGGCGCGGGATCTCCGGATCCTGGATCCGTTGCTCTCGTATCCGTCTACTGTTCTAGGGCGTGAGCGAGCGATTGTGATCAATTTGGAGCATATCAAAGCCATCATCACCGCTCAAGATGTGTTCGTGTTGAATGCTAAGGATCCGTCTGTAATCCCCTTTGTCGAGAAGCTTCAGCGCCGGGTGATGCGGCACCACCAAGCCACTAAGGCCGCTCAGGAGGGCAATGGTTATGATTCTAGTTGGAGAAATCTGTATGACTTGGAGGAGCCACGATCGAGGGCTCAAAGTCCTCGTAATCCCTACGAAGGATTTCCACAGGACGAAGAGGAGGGGAAGGAGAGCGGAAAACAAGGTCTCGAAAATCAGGAGGGATTGAAGGTTCTTCCATTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCCTGCACTTGCTTAGAAAGTGAAGCAGATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTAACTTCTAAAATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGATGAATTAGAGCACTTGCTAGATGATGATGAGGATATGGCTGAAATGTACTTAACAGAGAAGATGGTTCAACAACAGCTTGAGACCTCTTCCACTTCTTCGATTCCCGAAAGAGATGAAACGGACACTGAAGTTCAGCGATTAGGCACCGATGACACTCTTCCTGCTGAAATATCATTGGAAGGTGGTGGAATTTCTGGTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGTAGGGAGAGCCACGGGAGCCGGACAAGCACTACCTATAGCGCTATAAGCAAGCACCTCGATGTCGAGGAGCTCGAGATGCTGTTGGAGGCATACTTTGTGCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAGCAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACAGCAACCCTTGTCGTGAGCGCTTTCGTGGTGGTGGCGGGTATCTTCGGGATGAACATCCATATCGAACTGTTTGAACCGGAAAAAGCAGGCATGCCGGAGTTCCTGTGGACTGTTGGTGGCAGTGCTACTGGAACCATCATCTTGTATGTTATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTCGAGTAG 1485 49.83 MRGHNSHPQKPGFARPEDEAEPVRSFLPGTNAPIGAGIRKKGTGVRTWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQDVFVLNAKDPSVIPFVEKLQRRVMRHHQATKAAQEGNGYDSSWRNLYDLEEPRSRAQSPRNPYEGFPQDEEEGKESGKQGLENQEGLKVLPFEFVALEACLEAACTCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLETSSTSSIPERDETDTEVQRLGTDDTLPAEISLEGGGISGNYEGNMDASQDHLFGASNVGRESHGSRTSTTYSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFLWTVGGSATGTIILYVIAIAWCKHKRLLE 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36189412 36193893 + Sed0024052.1 Sed10g1946 728450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1946 494 Gene3D Magnesium transport protein CorA, transmembrane region 156 422 - -
Sed10g1946 494 MobiDBLite consensus disorder prediction 1 26 - -
Sed10g1946 494 MobiDBLite consensus disorder prediction 163 191 - -
Sed10g1946 494 MobiDBLite consensus disorder prediction 293 313 - -
Sed10g1946 494 Pfam Magnesium transporter MRS2-like 199 293 - -
Sed10g1946 494 Pfam Magnesium transporter MRS2-like 53 135 - -
Sed10g1946 494 Pfam Magnesium transporter MRS2-like 372 417 - -
Sed10g1946 494 Gene3D - 36 119 - -
Sed10g1946 494 MobiDBLite consensus disorder prediction 177 191 - -
Sed10g1946 494 CDD Mrs2_Mfm1p-like 48 492 IPR039204 -
Sed10g1946 494 FunFam Magnesium transporter MRS2-1 36 119 - -
Sed10g1946 494 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 492 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1392 Sed-Chr5:26967057 Sed10g1946 Sed-Chr10:36189412 7.70E-89 dispersed
Sed06g2048 Sed-Chr6:44545785 Sed10g1946 Sed-Chr10:36189412 2.70E-89 dispersed
Sed10g1946 Sed-Chr10:36189412 Sed13g0547 Sed-Chr13:3768900 2.00E-74 dispersed
Sed10g1946 Sed-Chr10:36189412 Sed05g2636 Sed-Chr5:37936720 3.10E-248 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1946 - - - 0.0