Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1967 ATGATGCTGAGGTCATGTTTCCGGCCGATGGAGCGGTGTTTTGGGCGGTGGGCCGGCGATGGGCTGTTCTGGCACTCGGAATTGAAGAATCATTCCTCTGGGGATTATTCCATGGCCGTTGTTCAAGCTAATTCGTGTCTTGAGGATCAGAGTCAGGTCTTCACGTCTTCCTCTGCAACTTATGTTGGCGTTTATGATGGCCATGGCGGCCCTGAGGCTTCTCGTTTCGTGAATAAGTATCTTTTTCCTTATATGCACAAGTTTGCTTCAGAGCAAGGTGGGCTCTCGGAGGATGTTATTAAGAAGGCATTCAGTGCTACAGAAGAGGAGTTTTTGCGTTTGGTGAAGCGGTCTTTGCCTGCAAAGCCACAGATTGCATCAGTTGGATCGTGTTGTCTTGTAGGTGCAATTACGAACAAGAAATTATACGTTGCGAATCTTGGGGATTCGAGAGCTGTGCTCGGCCGTAGAGTTTCCGAGAGTCGTAGAACACCAGTTGTTGCAGAACGGTTATCCACCGATCACAATGTCGGAGTAGATGAAGTTAGGAAAGAAGTTGTAGCACTTCATCCTGATGACTCCCATATTGTTGTCTATACCCGTGGAGTTTGGAGGATAAAGGGCATAATTCAGGTTTCAAGATCTATTGGCGATGTCTATCTAAAGAAACCCGAATTCAACCGGGATCCAATATTCCAACAATTTGGGAACGCCGTTCCATTGAAGCGAGCGGTAATGACTGCAGAACCATCGATCCTGACACGAGAGCTTAAACCCCAAGACTTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAACTGACTGATGAGGCTGCTGTGGAGATAGTTTTCAAGAACCCAAGAGCTGGAATTGCCAAAAGATTAGTGAAAGCTGCCCTCAATGAGGCGGCGAGGAAACGTGAAATGAGATATGGTGACATAAAGAAGATTGAAAAAGGGATTCGTCGTCATTTCCACGACGACATCACTGCCATTGTCGTTTATCTCGACCATAACAGAAGTCCAACTACCAACCGAGCAAAGAACGTCATCACCGGGCTCACCAATGCACCTGTTGATATTTTTTCTCTAAACTCAAACAGTGAGGCAGAGGAAAAACTTCACCCAATGTTCTGA 1140 46.49 MMLRSCFRPMERCFGRWAGDGLFWHSELKNHSSGDYSMAVVQANSCLEDQSQVFTSSSATYVGVYDGHGGPEASRFVNKYLFPYMHKFASEQGGLSEDVIKKAFSATEEEFLRLVKRSLPAKPQIASVGSCCLVGAITNKKLYVANLGDSRAVLGRRVSESRRTPVVAERLSTDHNVGVDEVRKEVVALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNAVPLKRAVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLVKAALNEAARKREMRYGDIKKIEKGIRRHFHDDITAIVVYLDHNRSPTTNRAKNVITGLTNAPVDIFSLNSNSEAEEKLHPMF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36360296 36363564 + Sed0027509.1 Sed10g1967 728471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1967 379 Gene3D - 24 347 IPR036457 -
Sed10g1967 379 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169(InterPro)
Sed10g1967 379 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Sed10g1967 379 PANTHER PROTEIN PHOSPHATASE 28 336 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed10g1967 379 SMART PP2C_4 25 335 IPR001932 -
Sed10g1967 379 SUPERFAMILY PP2C-like 33 338 IPR036457 -
Sed10g1967 379 Pfam Protein phosphatase 2C 54 306 IPR001932 -
Sed10g1967 379 CDD PP2Cc 36 337 IPR001932 -
Sed10g1967 379 FunFam Probable protein phosphatase 2C 42 26 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1967 Sed-Chr10:36360296 Sed12g1246 Sed-Chr12:8908618 1.20E-111 dispersed
Sed10g1967 Sed-Chr10:36360296 Sed10g1968 Sed-Chr10:36360296 2.10E-167 tandem
Sed10g1967 Sed-Chr10:36360296 Sed05g2620 Sed-Chr5:37784969 3.90E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1967 - - - 0.0