Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1968 | ATGATGCTGAGGTCATGTTTCCGGCCGATGGAGCGGTGTTTTGGGCGGTGGGCCGGCGATGGGCTGTTCTGGCACTCGGAATTGAAGAATCATTCCTCTGGGGATTATTCCATGGCCGTTGTTCAAGCTAATTCGTGTCTTGAGGATCAGAGTCAGGTCTTCACGTCTTCCTCTGCAACTTATGTTGGCGTTTATGATGGCCATGGCGGCCCTGAGGCTTCTCGTTTCGTGAATAAGTATCTTTTTCCTTATATGCACAAGTTTGCTTCAGAGCAAGGTGGGCTCTCGGAGGATGTTATTAAGAAGGCATTCAGTGCTACAGAAGAGGAGTTTTTGCGTTTGGTGAAGCGGTCTTTGCCTGCAAAGCCACAGATTGCATCAGTTGGATCGTGTTGTCTTGTAGGTGCAATTACGAACAAGAAATTATACGTTGCGAATCTTGGGGATTCGAGAGCTGTGCTCGGCCGTAGAGTTTCCGAGAGTCGTAGAACACCAGTTGTTGCAGAACGGTTATCCACCGATCACAATGTCGGAGTAGATGAAGTTAGGAAAGAAGTTGTAGCACTTCATCCTGATGACTCCCATATTGTTGTCTATACCCGTGGAGTTTGGAGGATAAAGGGCATAATTCAGGTTTCAAGATCTATTGGCGATGTCTATCTAAAGAAACCCGAATTCAACCGGGATCCAATATTCCAACAATTTGGGAACGCCGTTCCATTGAAGCGAGCGGTAATGACTGCAGAACCATCGATCCTGACACGAGAGCTTAAACCCCAAGACTTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAACTGACTGATGAGGCTGCTGTGGAGATAGTTTTCAAGAACCCAAGAGCTGTAAGTTGCTCAGTACACTCCCAACTATGTCATTTATATAAACATAAAAATAAAAAAAAATGTTGTAGGTATTAA | 945 | 45.5 | MMLRSCFRPMERCFGRWAGDGLFWHSELKNHSSGDYSMAVVQANSCLEDQSQVFTSSSATYVGVYDGHGGPEASRFVNKYLFPYMHKFASEQGGLSEDVIKKAFSATEEEFLRLVKRSLPAKPQIASVGSCCLVGAITNKKLYVANLGDSRAVLGRRVSESRRTPVVAERLSTDHNVGVDEVRKEVVALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNAVPLKRAVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAVSCSVHSQLCHLYKHKNKKKCCRY | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36360296 | 36363564 | + | Sed0027509.2 | Sed10g1968 | 728472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1968 | 314 | PANTHER | PROTEIN PHOSPHATASE | 28 | 300 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed10g1968 | 314 | ProSitePatterns | PPM-type phosphatase domain signature. | 61 | 69 | IPR000222 | GO:0043169(InterPro) | |
Sed10g1968 | 314 | Pfam | Protein phosphatase 2C | 54 | 286 | IPR001932 | - | |
Sed10g1968 | 314 | CDD | PP2Cc | 36 | 302 | IPR001932 | - | |
Sed10g1968 | 314 | Gene3D | - | 24 | 312 | IPR036457 | - | |
Sed10g1968 | 314 | SMART | PP2C_4 | 25 | 303 | IPR001932 | - | |
Sed10g1968 | 314 | SUPERFAMILY | PP2C-like | 32 | 286 | IPR036457 | - | |
Sed10g1968 | 314 | FunFam | Probable protein phosphatase 2C 42 | 26 | 314 | - | - | |
Sed10g1968 | 314 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 314 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2620 | Sed-Chr5:37784969 | Sed10g1968 | Sed-Chr10:36360296 | 5.10E-142 | dispersed | |
Sed10g1968 | Sed-Chr10:36360296 | Sed12g1246 | Sed-Chr12:8908618 | 2.90E-90 | dispersed | |
Sed10g1967 | Sed-Chr10:36360296 | Sed10g1968 | Sed-Chr10:36360296 | 2.10E-167 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1968 | - | - | - | 0.0 |