Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1978 ATGGACTCGCCGGTCCACCACGATCCCTCCGTCCGGACGCCGAAGAAGCGCGAGTTGGAGGATCATTCTCTGCAACTTTCCTCCGCCAACAAGAGAGTCGTGGTTGGCGACATCGCGAACTCGTTGATTATCTTCCGTTCTAGCCAGTGCTCGCTTTCGGATCAGGAGATGGCGGATAAGGATCTGGATGAGGAGGAACTTCCGGTTGATTGTTCGACGAAGTGTGGCTCTTCGTCTAGCATCTATAATCATCTTCGATCTCTCGAGATGGAGTTACAGATGAATGTACGGCCTAATTACATTGGAACGGCTCACAATGGTGATTCCAGTTTAAGTTTCATTCGTATGCGAGGAATTCTAGTGGATTGGTTAGTAGAGGTTGCCGAGGAATACAAGCTCGTATCGGACACCCTATATTTCACAGTATCATATATTGACAGATACTTGTCCTCCCAAGCTGTTGACAAAAGCAAGCTTCAGCTTCTGGGTGTTTCTTGCATGCTTATTGCCTCAAATCATGAAGAAATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACATATACCAAAGAACAGGTATTTAGTATGGAGAGAGAGGTACGGAAAGTCTTGACCTGTGAAGGTGCCCCCACGATTAAAAACTTTCTCAGAATATTTACAAAAGTTTCTTTGGAAAATTGGAAGGCTTCAAACTTGGAATTTGAGTTCTTGAGTTGTTATCTTGCCGAGCTGAGTTTGTTAGATCACCGTTGTATACGATTCTTACCATCAATAGTCGCTGCATCAGCTATTTTTCTTTCTAGATTCACAATTCAGCCAGAGAAACATCCTTGGTGTTTATCACTCCAACGTTATTCCGGTTACAGGCCATCTGAACTGAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAACGAAGCTTGTTACAAGCATCAAGAGACAAGTACAAGCAGACTAAGTTCAAGTGTGTGGCAGATTTTCCTTCTCCCTCAGAAATTCCTGCATATTATTTTGAGGACATTGACAAGCAAATCATTCAACTAGTTCTTGTGAACATAGCTGTTTGA 1089 42.7 MDSPVHHDPSVRTPKKRELEDHSLQLSSANKRVVVGDIANSLIIFRSSQCSLSDQEMADKDLDEEELPVDCSTKCGSSSSIYNHLRSLEMELQMNVRPNYIGTAHNGDSSLSFIRMRGILVDWLVEVAEEYKLVSDTLYFTVSYIDRYLSSQAVDKSKLQLLGVSCMLIASNHEEISPPHVEDFCYITDNTYTKEQVFSMEREVRKVLTCEGAPTIKNFLRIFTKVSLENWKASNLEFEFLSCYLAELSLLDHRCIRFLPSIVAASAIFLSRFTIQPEKHPWCLSLQRYSGYRPSELKECILAIHDLQLNRKRSLLQASRDKYKQTKFKCVADFPSPSEIPAYYFEDIDKQIIQLVLVNIAV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36424674 36429638 + Sed0001979.1 Sed10g1978 728482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1978 362 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Sed10g1978 362 SMART Cyclin_C_2 214 337 IPR004367 -
Sed10g1978 362 SMART cyclin_7 122 206 IPR013763 -
Sed10g1978 362 SMART cyclin_7 218 306 IPR013763 -
Sed10g1978 362 PANTHER CYCLINS 60 325 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed10g1978 362 ProSitePatterns Cyclins signature. 117 148 IPR048258 -
Sed10g1978 362 Gene3D - 96 212 - -
Sed10g1978 362 FunFam Cyclin A1 199 333 - -
Sed10g1978 362 MobiDBLite consensus disorder prediction 1 23 - -
Sed10g1978 362 Gene3D - 81 332 - -
Sed10g1978 362 Pfam Cyclin, C-terminal domain 214 336 IPR004367 -
Sed10g1978 362 SUPERFAMILY Cyclin-like 80 210 IPR036915 -
Sed10g1978 362 SUPERFAMILY Cyclin-like 214 339 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1978 Sed-Chr10:36424674 Sed13g1789 Sed-Chr13:22950397 1.80E-83 dispersed
Sed10g1978 Sed-Chr10:36424674 Sed05g1679 Sed-Chr5:30582433 2.80E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1978 K06627 - csv:101213896 521.161