Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1999 ATGGATCCAAATTCTACTGATTCCACGATATCGCCTACTGTTAAATCTTCGGAGACTAAACCTCCAGATGTACAGCCTCAGGCTCCTGCTAGCTCTAGAATGAATAATGTGTCACATGATGGGCCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCTAAAAACTTGAAAATTCCGCAACCACAGTCAGGTTCACCAGATGGTGAAAATGCTGGGAAGTCGGCGTTTGCTCGTTTTACTAGTGGCTTAGGCTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCTAGATGGAACTTTTACACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAAAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAGGTCAAAGCTCGTCATGCCGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATCGCTATGGGTTTCCCTGCTGGTGACTTGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTTTTTGAAACACATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCTGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTCTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAGTTGATAATATCATTTTGCCGAAGCGCGTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCTAGTCTTCTTATGTTTCTGAAGTTCTTTCCAACCTCTGAAGAATCCATTGAATACTACAACCAAAGAAGGTGTTTTGATGGCAAAGGCCTGGTTTTGCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGCATTTCAACGTACTTCAATGGAGAAAATCCTCCTGGTCGCAGGTGTGTGCTTAGAGGGTTTCGTTTGCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACCAAAACCCATCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCGAAGAAAGGGATAATGGTATTCGCTTTGCCTGGCGAGCCTGGTCTGGCTGAGGTGTGTGGGGACTTCAAGATTCATTTTCACGATCGCCAAGGAGATTTCTATTGTTGGCTCAACACGACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAATTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAATCGATACGTCACCCAAAATCGACAATACCACCCCGAAGTCGGATGATAGCTCGGGCTCGAAACCTTCTGCAGCTGATGGAAGTGAAGGTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAAAGACGATCTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAGAAAGGAGGCAGATGCAGGCTTAGGGGCCGAAGGGTCAGCCGTCAAGACAACATCTAAATCACAAACGAGCGCGACTTCATCCGATGACGTTGCGAGTTTGTCTCACGCAACGAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCCGCCACCGACCAAAAACGAGATGGAGTTGGAAGATCTGATTCCCTCTCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGAGACGACGAAGACTACGAGAGTGAGTAA 1833 43.97 MDPNSTDSTISPTVKSSETKPPDVQPQAPASSRMNNVSHDGPSKLSPTGITSWAKNLKIPQPQSGSPDGENAGKSAFARFTSGLGLNLSPKSAAPNDSLDGTFTPAQPSFVGSITKGLVDSSKSAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLMFLKFFPTSEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERISTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAEVCGDFKIHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLIDTSPKIDNTTPKSDDSSGSKPSAADGSEGSENQNRKSGTNDKDDLFSDSESEGGSSKSRKEADAGLGAEGSAVKTTSKSQTSATSSDDVASLSHATKQVSLGDGGAKQTAPATDQKRDGVGRSDSLSEVPNSESEFKAMAADASVFTFGDDEDYESE 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36581360 36589354 + Sed0005004.1 Sed10g1999 728503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1999 610 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311(InterPro)
Sed10g1999 610 MobiDBLite consensus disorder prediction 1 70 - -
Sed10g1999 610 Pfam PTEN2, C2 domain 328 455 - -
Sed10g1999 610 MobiDBLite consensus disorder prediction 1 75 - -
Sed10g1999 610 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 127 324 - -
Sed10g1999 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 452 IPR035892 -
Sed10g1999 610 SMART PTEN_C2_2 326 454 IPR014020 -
Sed10g1999 610 ProSiteProfiles Phosphatase tensin-type domain profile. 142 321 IPR029023 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 488 517 - -
Sed10g1999 610 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 222 276 - -
Sed10g1999 610 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 235 295 IPR000387 GO:0016311(InterPro)
Sed10g1999 610 Gene3D - 331 455 - -
Sed10g1999 610 Gene3D Protein tyrosine phosphatase superfamily 127 324 IPR029021 -
Sed10g1999 610 ProSiteProfiles C2 tensin-type domain profile. 328 455 IPR014020 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 457 610 - -
Sed10g1999 610 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 155 322 IPR029021 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 457 487 - -
Sed10g1999 610 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 129 550 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed10g1999 610 CDD PTP_PTEN 152 317 IPR045101 GO:0016791(InterPro)
Sed10g1999 610 MobiDBLite consensus disorder prediction 525 551 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2597 Sed-Chr5:37669456 Sed10g1999 Sed-Chr10:36581360 0.00E+00 dispersed
Sed05g2598 Sed-Chr5:37669456 Sed10g1999 Sed-Chr10:36581360 0.00E+00 dispersed
Sed10g1999 Sed-Chr10:36581360 Sed14g0871 Sed-Chr14:17546161 4.20E-186 dispersed
Sed10g1999 Sed-Chr10:36581360 Sed05g2595 Sed-Chr5:37669456 2.10E-307 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1999 K01110 - csv:101222304 1088.17