Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1999 ATGGATCCAAATTCTACTGATTCCACGATATCGCCTACTGTTAAATCTTCGGAGACTAAACCTCCAGATGTACAGCCTCAGGCTCCTGCTAGCTCTAGAATGAATAATGTGTCACATGATGGGCCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCTAAAAACTTGAAAATTCCGCAACCACAGTCAGGTTCACCAGATGGTGAAAATGCTGGGAAGTCGGCGTTTGCTCGTTTTACTAGTGGCTTAGGCTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCTAGATGGAACTTTTACACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAAAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAGGTCAAAGCTCGTCATGCCGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATCGCTATGGGTTTCCCTGCTGGTGACTTGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTTTTTGAAACACATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCTGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTCTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAGTTGATAATATCATTTTGCCGAAGCGCGTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCTAGTCTTCTTATGTTTCTGAAGTTCTTTCCAACCTCTGAAGAATCCATTGAATACTACAACCAAAGAAGGTGTTTTGATGGCAAAGGCCTGGTTTTGCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGCATTTCAACGTACTTCAATGGAGAAAATCCTCCTGGTCGCAGGTGTGTGCTTAGAGGGTTTCGTTTGCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACCAAAACCCATCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCGAAGAAAGGGATAATGGTATTCGCTTTGCCTGGCGAGCCTGGTCTGGCTGAGGTGTGTGGGGACTTCAAGATTCATTTTCACGATCGCCAAGGAGATTTCTATTGTTGGCTCAACACGACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAATTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAATCGATACGTCACCCAAAATCGACAATACCACCCCGAAGTCGGATGATAGCTCGGGCTCGAAACCTTCTGCAGCTGATGGAAGTGAAGGTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAAAGACGATCTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAGAAAGGAGGCAGATGCAGGCTTAGGGGCCGAAGGGTCAGCCGTCAAGACAACATCTAAATCACAAACGAGCGCGACTTCATCCGATGACGTTGCGAGTTTGTCTCACGCAACGAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCCGCCACCGACCAAAAACGAGATGGAGTTGGAAGATCTGATTCCCTCTCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGAGACGACGAAGACTACGAGAGTGAGTAA 1833 43.97 MDPNSTDSTISPTVKSSETKPPDVQPQAPASSRMNNVSHDGPSKLSPTGITSWAKNLKIPQPQSGSPDGENAGKSAFARFTSGLGLNLSPKSAAPNDSLDGTFTPAQPSFVGSITKGLVDSSKSAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLMFLKFFPTSEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERISTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAEVCGDFKIHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLIDTSPKIDNTTPKSDDSSGSKPSAADGSEGSENQNRKSGTNDKDDLFSDSESEGGSSKSRKEADAGLGAEGSAVKTTSKSQTSATSSDDVASLSHATKQVSLGDGGAKQTAPATDQKRDGVGRSDSLSEVPNSESEFKAMAADASVFTFGDDEDYESE 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36581360 36589354 + Sed0005004.1 Sed10g1999 728503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1999 610 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311(InterPro)
Sed10g1999 610 MobiDBLite consensus disorder prediction 1 70 - -
Sed10g1999 610 Pfam PTEN2, C2 domain 328 455 - -
Sed10g1999 610 MobiDBLite consensus disorder prediction 1 75 - -
Sed10g1999 610 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 127 324 - -
Sed10g1999 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 452 IPR035892 -
Sed10g1999 610 SMART PTEN_C2_2 326 454 IPR014020 -
Sed10g1999 610 ProSiteProfiles Phosphatase tensin-type domain profile. 142 321 IPR029023 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 488 517 - -
Sed10g1999 610 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 222 276 - -
Sed10g1999 610 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 235 295 IPR000387 GO:0016311(InterPro)
Sed10g1999 610 Gene3D - 331 455 - -
Sed10g1999 610 Gene3D Protein tyrosine phosphatase superfamily 127 324 IPR029021 -
Sed10g1999 610 ProSiteProfiles C2 tensin-type domain profile. 328 455 IPR014020 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 457 610 - -
Sed10g1999 610 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 155 322 IPR029021 -
Sed10g1999 610 MobiDBLite consensus disorder prediction 457 487 - -
Sed10g1999 610 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 129 550 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed10g1999 610 CDD PTP_PTEN 152 317 IPR045101 GO:0016791(InterPro)
Sed10g1999 610 MobiDBLite consensus disorder prediction 525 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1999 K01110 - - csv:101222304 1088.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2597 Sed-Chr5:37669456 Sed10g1999 Sed-Chr10:36581360 0.00E+00 dispersed
Sed05g2598 Sed-Chr5:37669456 Sed10g1999 Sed-Chr10:36581360 0.00E+00 dispersed
Sed10g1999 Sed-Chr10:36581360 Sed14g0871 Sed-Chr14:17546161 4.20E-186 dispersed
Sed10g1999 Sed-Chr10:36581360 Sed05g2595 Sed-Chr5:37669456 2.10E-307 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed10g0663 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g0664 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g1999 . 20 610 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.2e-180 630.9
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.1e-180 628.6
Sed05g2595 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2596 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2597 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2598 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G50110 52.6 7.0e-160 562.0
Sed14g0873 . 33 417 Protein tyrosine phosphatase (PTP) family AT3G50110 70.0 5.0e-158 555.8
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G50110 61.5 3.0e-155 546.6
Sed04g3520 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 4.4e-155 545.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1172.5
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT3G10550 66.7 0.0e+00 1142.9
Sed01g2863 . 3 764 Protein tyrosine phosphatase (PTP) family AT3G10550 70.0 2.6e-311 1065.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 65.6 0.0e+00 1110.1
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT5G04540 63.5 6.8e-314 1073.5
Sed01g2863 . 4 764 Protein tyrosine phosphatase (PTP) family AT5G04540 66.7 2.0e-295 1012.7
Sed12g2294 . 1 1135 Protein tyrosine phosphatase (PTP) family AT5G58160 52.9 0.0e+00 1083.9
Sed05g1740 . 1 1349 Protein tyrosine phosphatase (PTP) family AT5G58160 51.0 1.0e-303 1040.8
Sed05g1741 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.5 3.9e-279 959.1
Sed10g1774 . 75 390 Protein tyrosine phosphatase (PTP) family AT1G71860 66.6 7.6e-121 431.4
Sed12g2546 . 27 937 Protein tyrosine phosphatase (PTP) family AT5G23720 60.5 8.3e-287 984.2
Sed04g1865 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 7.8e-42 167.9
Sed04g1863 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 7.8e-42 167.9
Sed04g3441 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 7.7e-72 267.7
Sed04g3442 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 7.7e-72 267.7
Sed05g1887 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 2.5e-70 262.7
Sed06g2006 . 103 384 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 2.0e-114 409.8
Sed07g2221 . 94 378 Protein tyrosine phosphatase (PTP) family AT3G52180 69.5 1.7e-113 406.8
Sed07g2222 . 94 378 Protein tyrosine phosphatase (PTP) family AT3G52180 69.5 1.7e-113 406.8
Sed04g0349 . 5 284 Protein tyrosine phosphatase (PTP) family AT3G10940 65.7 1.2e-106 384.0
Sed06g0547 . 146 594 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.4e-199 692.6
Sed06g0548 . 2 450 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.4e-199 692.6
Sed01g0708 . 8 208 Protein tyrosine phosphatase (PTP) family AT2G32960 58.6 5.3e-74 275.4
Sed05g1892 . 38 234 Protein tyrosine phosphatase (PTP) family AT2G32960 65.8 7.7e-73 271.6
Sed04g3433 . 6 238 Protein tyrosine phosphatase (PTP) family AT2G32960 56.8 1.0e-72 271.2
Sed05g3223 . 10 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.3e-72 270.8
Sed05g1893 . 38 204 Protein tyrosine phosphatase (PTP) family AT2G32960 64.9 5.5e-71 265.4
Sed04g1684 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.1 4.8e-99 359.0
Sed03g1757 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.2 2.7e-78 290.0
Sed03g1757 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 4.4e-46 182.2
Sed01g0708 . 18 208 Protein tyrosine phosphatase (PTP) family AT4G03960 70.2 1.5e-76 283.5
Sed05g3223 . 25 212 Protein tyrosine phosphatase (PTP) family AT4G03960 71.3 1.7e-75 280.0
Sed05g1893 . 34 204 Protein tyrosine phosphatase (PTP) family AT4G03960 75.4 1.8e-74 276.6
Sed05g1892 . 34 234 Protein tyrosine phosphatase (PTP) family AT4G03960 64.2 1.0e-69 260.8
Sed04g3433 . 39 238 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 5.2e-69 258.5
Sed08g1212 . 5 171 Protein tyrosine phosphatase (PTP) family AT4G03960 59.9 8.6e-56 214.5
Sed06g0972 . 14 183 Protein tyrosine phosphatase (PTP) family AT4G03960 56.1 2.3e-53 206.5
Sed08g1212 . 1 200 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-77 285.4
Sed06g0972 . 3 196 Protein tyrosine phosphatase (PTP) family AT3G02800 65.6 1.2e-73 273.9
Sed01g0708 . 34 202 Protein tyrosine phosphatase (PTP) family AT3G02800 58.6 4.7e-57 218.8
Sed05g3223 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 60.5 5.1e-56 215.3
Sed05g1893 . 40 193 Protein tyrosine phosphatase (PTP) family AT3G02800 63.0 8.8e-56 214.5
Sed05g1892 . 40 223 Protein tyrosine phosphatase (PTP) family AT3G02800 52.7 5.0e-51 198.7
Sed04g3433 . 44 227 Protein tyrosine phosphatase (PTP) family AT3G02800 51.1 1.6e-49 193.7
Sed07g2453 . 1 189 Protein tyrosine phosphatase (PTP) family AT3G55270 65.3 1.5e-63 242.3
Sed04g2798 . 20 188 Protein tyrosine phosphatase (PTP) family AT3G55270 67.1 4.5e-60 230.7
Sed04g2799 . 20 188 Protein tyrosine phosphatase (PTP) family AT3G55270 67.1 4.5e-60 230.7
Sed04g3520 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 4.4e-155 545.4
Sed05g2595 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2596 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2597 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2598 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed10g1999 . 8 610 Protein tyrosine phosphatase (PTP) family AT3G19420 63.5 7.8e-217 751.1
Sed10g0663 . 31 605 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 3.9e-200 695.7
Sed10g0664 . 31 605 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 3.9e-200 695.7
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G19420 59.5 4.8e-190 662.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G19420 53.6 1.9e-170 597.0
Sed14g0873 . 33 419 Protein tyrosine phosphatase (PTP) family AT3G19420 70.9 8.2e-166 581.6
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G19420 64.1 3.1e-165 579.7
Sed10g0663 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g0664 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g1999 . 20 610 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.2e-180 630.9
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.1e-180 628.6
Sed05g2595 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2596 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2597 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2598 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G50110 52.6 7.0e-160 562.0
Sed14g0873 . 33 417 Protein tyrosine phosphatase (PTP) family AT3G50110 70.0 5.0e-158 555.8
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G50110 61.5 3.0e-155 546.6
Sed12g2294 . 1 1135 Protein tyrosine phosphatase (PTP) family AT5G58160 52.9 0.0e+00 1083.9
Sed05g1740 . 1 1349 Protein tyrosine phosphatase (PTP) family AT5G58160 51.0 1.0e-303 1040.8
Sed05g1741 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.5 3.9e-279 959.1
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1172.5
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT3G10550 66.7 0.0e+00 1142.9
Sed01g2863 . 3 764 Protein tyrosine phosphatase (PTP) family AT3G10550 70.0 2.6e-311 1065.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 65.6 0.0e+00 1110.1
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT5G04540 63.5 6.8e-314 1073.5
Sed01g2863 . 4 764 Protein tyrosine phosphatase (PTP) family AT5G04540 66.7 2.0e-295 1012.7
Sed05g1208 . 64 244 Protein tyrosine phosphatase (PTP) family AT3G44620 63.9 9.9e-68 254.6
Sed05g1209 . 64 172 Protein tyrosine phosphatase (PTP) family AT3G44620 73.6 8.7e-40 161.8
Sed04g0821 . 24 319 Protein tyrosine phosphatase (PTP) family AT2G35320 62.5 3.6e-109 392.5
Sed04g0822 . 24 319 Protein tyrosine phosphatase (PTP) family AT2G35320 62.5 3.6e-109 392.5
Sed14g0659 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 4.3e-285 978.0
Sed14g0660 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 4.3e-285 978.0
Sed14g0659 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.9e-256 882.9
Sed14g0660 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.9e-256 882.9
Sed14g0659 . 78 674 Protein tyrosine phosphatase (PTP) family AT5G28210 57.2 2.3e-187 653.3
Sed14g0660 . 78 674 Protein tyrosine phosphatase (PTP) family AT5G28210 57.2 2.3e-187 653.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83