Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1999 | ATGGATCCAAATTCTACTGATTCCACGATATCGCCTACTGTTAAATCTTCGGAGACTAAACCTCCAGATGTACAGCCTCAGGCTCCTGCTAGCTCTAGAATGAATAATGTGTCACATGATGGGCCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCTAAAAACTTGAAAATTCCGCAACCACAGTCAGGTTCACCAGATGGTGAAAATGCTGGGAAGTCGGCGTTTGCTCGTTTTACTAGTGGCTTAGGCTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCTAGATGGAACTTTTACACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAAAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAGGTCAAAGCTCGTCATGCCGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATCGCTATGGGTTTCCCTGCTGGTGACTTGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTTTTTGAAACACATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCTGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTCTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAGTTGATAATATCATTTTGCCGAAGCGCGTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCTAGTCTTCTTATGTTTCTGAAGTTCTTTCCAACCTCTGAAGAATCCATTGAATACTACAACCAAAGAAGGTGTTTTGATGGCAAAGGCCTGGTTTTGCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGCATTTCAACGTACTTCAATGGAGAAAATCCTCCTGGTCGCAGGTGTGTGCTTAGAGGGTTTCGTTTGCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACCAAAACCCATCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCGAAGAAAGGGATAATGGTATTCGCTTTGCCTGGCGAGCCTGGTCTGGCTGAGGTGTGTGGGGACTTCAAGATTCATTTTCACGATCGCCAAGGAGATTTCTATTGTTGGCTCAACACGACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAATTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAATCGATACGTCACCCAAAATCGACAATACCACCCCGAAGTCGGATGATAGCTCGGGCTCGAAACCTTCTGCAGCTGATGGAAGTGAAGGTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAAAGACGATCTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAGAAAGGAGGCAGATGCAGGCTTAGGGGCCGAAGGGTCAGCCGTCAAGACAACATCTAAATCACAAACGAGCGCGACTTCATCCGATGACGTTGCGAGTTTGTCTCACGCAACGAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCCGCCACCGACCAAAAACGAGATGGAGTTGGAAGATCTGATTCCCTCTCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGAGACGACGAAGACTACGAGAGTGAGTAA | 1833 | 43.97 | MDPNSTDSTISPTVKSSETKPPDVQPQAPASSRMNNVSHDGPSKLSPTGITSWAKNLKIPQPQSGSPDGENAGKSAFARFTSGLGLNLSPKSAAPNDSLDGTFTPAQPSFVGSITKGLVDSSKSAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLMFLKFFPTSEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERISTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAEVCGDFKIHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLIDTSPKIDNTTPKSDDSSGSKPSAADGSEGSENQNRKSGTNDKDDLFSDSESEGGSSKSRKEADAGLGAEGSAVKTTSKSQTSATSSDDVASLSHATKQVSLGDGGAKQTAPATDQKRDGVGRSDSLSEVPNSESEFKAMAADASVFTFGDDEDYESE | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36581360 | 36589354 | + | Sed0005004.1 | Sed10g1999 | 728503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1999 | 610 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 258 | 268 | IPR016130 | GO:0016311(InterPro) | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Sed10g1999 | 610 | Pfam | PTEN2, C2 domain | 328 | 455 | - | - | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Sed10g1999 | 610 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 127 | 324 | - | - | |
Sed10g1999 | 610 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 346 | 452 | IPR035892 | - | |
Sed10g1999 | 610 | SMART | PTEN_C2_2 | 326 | 454 | IPR014020 | - | |
Sed10g1999 | 610 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 142 | 321 | IPR029023 | - | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 488 | 517 | - | - | |
Sed10g1999 | 610 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 222 | 276 | - | - | |
Sed10g1999 | 610 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 235 | 295 | IPR000387 | GO:0016311(InterPro) | |
Sed10g1999 | 610 | Gene3D | - | 331 | 455 | - | - | |
Sed10g1999 | 610 | Gene3D | Protein tyrosine phosphatase superfamily | 127 | 324 | IPR029021 | - | |
Sed10g1999 | 610 | ProSiteProfiles | C2 tensin-type domain profile. | 328 | 455 | IPR014020 | - | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 457 | 610 | - | - | |
Sed10g1999 | 610 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 155 | 322 | IPR029021 | - | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 457 | 487 | - | - | |
Sed10g1999 | 610 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 129 | 550 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
Sed10g1999 | 610 | CDD | PTP_PTEN | 152 | 317 | IPR045101 | GO:0016791(InterPro) | |
Sed10g1999 | 610 | MobiDBLite | consensus disorder prediction | 525 | 551 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2597 | Sed-Chr5:37669456 | Sed10g1999 | Sed-Chr10:36581360 | 0.00E+00 | dispersed | |
Sed05g2598 | Sed-Chr5:37669456 | Sed10g1999 | Sed-Chr10:36581360 | 0.00E+00 | dispersed | |
Sed10g1999 | Sed-Chr10:36581360 | Sed14g0871 | Sed-Chr14:17546161 | 4.20E-186 | dispersed | |
Sed10g1999 | Sed-Chr10:36581360 | Sed05g2595 | Sed-Chr5:37669456 | 2.10E-307 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1999 | K01110 | - | csv:101222304 | 1088.17 |