Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g2019 | ATGGCTCAGGTTTCGCCTCCACCTCCTGTTGCCGGCGCCGATCCGGCGGCCAATGGCGGGGCTAACCAGATTGTCACGACGTCGTTGTATGTCGGGGATCTTGACGTTAGCGTCACCGATTCGCAGCTCTATGATCTTTTCAATCAGATGGGGCAGGTGGTTTCGGTTAGGGTTTGCAGGGATTTGACCACTCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCTGTGGATGCATCGAGGGCGTTAGATGTGCTGAACTTCACCCCTTTGAATGGGAACCCTATTAGAGTTATGTATTCTCACCGTGACCCCAGTGTGCGGAAAAGTGGTTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTTTCTGCATTTGGAAGCATTCTATCCTGCAAAGTTGCTACAGATCCATCTGGCCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGAAACTGAGGAATCTGCCTTGAAAGCCATAGAGAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTATGTAGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAATGTCAGCGAGAAAACAAAGTTCAATAATATATTTGTTAAGAATCTGTCAGAAACTACAACTGAAGAAGATTTGAAGAATATGTTTGATGATTTTGGACCAATCACTAGTGTTGTGGTGATGAGGGATGGAGATGGCAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGATGATGCTGCTAGGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTTGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAGCCGATTTGAGCAGAGCGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCGAACTTGTATGTTAAGAATTTGGAGGATAGCATTGACGATGAGAAACTGAAGGAGTTATTCTCTGCATTTGGAACCATTACCTCATGCAAGGTTATGCGAGACCCTAGTGGAATAAGTAGAGGATCTGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCTGCTAGAGCTCTCGCAGAGATGAATGGAAGAATGATTGTGAACAAACCTCTTTATGTTGCACTTGCACAAAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCCCAAATGCAACCAATGCCCATGGCATCTCCAGTTGCTCCTCGTGGCATGCCAATATATCCTCCAGGTGGTCCAGGAATTGGACAACAAATATTCTATGGGCAAGCTCCACCTGCTATTATTTCCTCGCAGCCTGGCTTTGGTTATCAGCAGCAGCTCATGCCTGGAATGAGGCCGGGTGGAGGTCCTATGCCAAATTACTTTGTACCAATGGTTCAACCGGGCCAGCAAGGGCAAAGATCAGGTGGCAGGCGTCCAAGTGCTATTCAGCCTAACCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCGAGAGGACGTGTCTACCGTTTTCCTCATGGACGTGGAATGCCTGATCTGGGACCCATGCCTGGTGTTGCTGGAGGTATGTTCTCGGTTCCTTACGAGATGGGTGGCATGCCGCCACGTGATGCTGTTCACCCTCAACCAATTCCTGTTGGAGCTTTGGCTTCAGCCCTTGCTAATTCAACTCCAGAGCAGCAAAGAACGATGCTGGGAGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCTGCAAAGGTAACAGGTATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCTGAGGCTCTGAAAGCCAAGGTCGCCGAGGCATTGGAGGTGTTAAGAAGCGTGGCTCAGCAGACGGGCAATGCGGCTGATCAATTGGCTTCGCTGTCCCTGACTGACAACCTTGATTCCTAA | 1947 | 47.1 | MAQVSPPPPVAGADPAANGGANQIVTTSLYVGDLDVSVTDSQLYDLFNQMGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDPSGQSKGFGFVQFETEESALKAIEKLNGMLLNDKQVYVGPFLRKQERENVSEKTKFNNIFVKNLSETTTEEDLKNMFDDFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEALNGKKVDGKELYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLEDSIDDEKLKELFSAFGTITSCKVMRDPSGISRGSGFVAFSTPEEAARALAEMNGRMIVNKPLYVALAQRKEDRRARLQAQFSQMQPMPMASPVAPRGMPIYPPGGPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNYFVPMVQPGQQGQRSGGRRPSAIQPNQQPVPMMQQQMLPRGRVYRFPHGRGMPDLGPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANSTPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEALEVLRSVAQQTGNAADQLASLSLTDNLDS | 648 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 36768905 | 36773655 | + | Sed0025100.1 | Sed10g2019 | 728523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g2019 | 648 | CDD | RRM3_I_PABPs | 205 | 284 | - | - | |
| Sed10g2019 | 648 | FunFam | Polyadenylate-binding protein | 14 | 112 | - | - | |
| Sed10g2019 | 648 | SMART | rrm2_1 | 116 | 188 | IPR003954 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm2_1 | 28 | 101 | IPR003954 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm2_1 | 207 | 279 | IPR003954 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm2_1 | 310 | 382 | IPR003954 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 115 | 187 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 388 | IPR035979 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | Gene3D | - | 18 | 116 | IPR012677 | - | |
| Sed10g2019 | 648 | CDD | RRM1_I_PABPs | 28 | 107 | IPR034364 | - | |
| Sed10g2019 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 27 | 105 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Gene3D | - | 190 | 291 | IPR012677 | - | |
| Sed10g2019 | 648 | FunFam | Polyadenylate-binding protein | 547 | 629 | - | - | |
| Sed10g2019 | 648 | FunFam | Polyadenylate-binding protein | 197 | 291 | - | - | |
| Sed10g2019 | 648 | Gene3D | - | 292 | 394 | IPR012677 | - | |
| Sed10g2019 | 648 | SUPERFAMILY | PABC (PABP) domain | 491 | 637 | IPR036053 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 196 | IPR035979 | GO:0003676(InterPro) | |
| Sed10g2019 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 386 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | FunFam | Polyadenylate-binding protein | 292 | 397 | - | - | |
| Sed10g2019 | 648 | SMART | rrm1_1 | 310 | 382 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm1_1 | 207 | 279 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm1_1 | 116 | 188 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SMART | rrm1_1 | 28 | 101 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | SMART | poly_2 | 563 | 626 | IPR002004 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 28 | 624 | IPR006515 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | CDD | RRM2_I_PABPs | 113 | 189 | IPR045305 | - | |
| Sed10g2019 | 648 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 551 | 628 | IPR002004 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | PANTHER | RNA BINDING PROTEIN | 21 | 207 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Sed10g2019 | 648 | FunFam | Polyadenylate-binding protein | 113 | 196 | - | - | |
| Sed10g2019 | 648 | Pfam | Poly-adenylate binding protein, unique domain | 558 | 623 | IPR002004 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | CDD | RRM4_I_PABPs | 308 | 386 | - | - | |
| Sed10g2019 | 648 | Gene3D | - | 117 | 188 | IPR012677 | - | |
| Sed10g2019 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 206 | 283 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Pfam | RNA recognition motif | 311 | 379 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Pfam | RNA recognition motif | 29 | 99 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Pfam | RNA recognition motif | 208 | 276 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Pfam | RNA recognition motif | 117 | 185 | IPR000504 | GO:0003723(InterPro) | |
| Sed10g2019 | 648 | Gene3D | - | 546 | 630 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g2019 | Sed-Chr10:36768905 | Sed11g1386 | Sed-Chr11:29852935 | 2.10E-183 | dispersed | |
| Sed04g1427 | Sed-Chr4:28836323 | Sed10g2019 | Sed-Chr10:36768905 | 2.10E-135 | transposed | |
| Sed07g1578 | Sed-Chr7:12559596 | Sed10g2019 | Sed-Chr10:36768905 | 3.80E-12 | transposed | |
| Sed10g2019 | Sed-Chr10:36768905 | Sed13g0482 | Sed-Chr13:3303081 | 1.30E-291 | wgd | |
| Sed10g2019 | Sed-Chr10:36768905 | Sed05g2592 | Sed-Chr5:37650850 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g2019 | K13126 | - | csv:101223017 | 1107.82 |