Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g2023 | ATGAATTTCAGGAACTTTGAGGATATGCCACCAGGAGAAGGCACAATGGCAAAGGCAGAAGGAAATTTCGCATTGGCTCGACAGTCTTCCATATACTCTTTAACGTTCGACGAGATTCAGAACACATGGAGTGGACTCGGAAAGGATGTCGGCTCGATGAATATGGATGAACTTCTGAAAAACATATGGACTGCTGAAGAATCTCAGGCATTGACATCTGCTGCTGCTGCTACAAGTGGAGCTGGAAGCGCCTTCGGTGGGAACTTGCAGAGGCAAGGTTCGTTAACTTTACCCCGAACGATAAGTCAGAAAACGGTTGATGAAGTTTGGAAAGGCTTGAGTAAAGAGCATACTAGCGTTCGAGATGGCAGTGGAATTGAGGCAATGCCTCCACGACAACCGACATTAGGGGAGGTGACTTTGGAGGAGTTTTTAGCTAGAGCAGGAGTGGTAAGAGAAGAACCTCAACATATTGAGAGGCCTTGTGGATTTTATGGTGGATTATCAAGAGAAGACAATAATGGTGGTTTGGCTCTTGGGATGCTTATGGGAAATCAGATGGCTGATAACAAAAATATAGTTTCTAATCAGAATCAACAAAATTCAGTGTTTTTAGGAACAGGAGTTAGAAGGTCTTCCCAGCAGCAGCAGCAACAGCAGCAGCCACTTTTCCCCAAACCAGCTACTGTGACTTTTGCTTCATCAATGAATTTAGGAAATAATCCCCAGCTTTCTACTGGATCTGGAACTAATATGGGCGTGACCTCGAAACCTCCTTTATACAACCCTTTAATCCAAAGCAGCGGCATCGGTACGATTGGTTTGGGCACGAGAGGCGTAACTGTTGCTTCGAGATCTCCTACAAGTACAATATCATCTGATGTGATTACAAAAAACAGCATAGACACATTTTCTTATTCACCAGTTCCAGTTCCTTATTCATTTGGTCGGGGACGACGAAGTAACGGAGTTGTGGAGAAAGTTGTCGAGAGGAGGCAACGAAGAATGATCAAGAACAGAGAGTCAGCTGCAAGATCACGAGCTCGAAAACAGGCATACACCTTGGAGCTTGAAGCAGAAGTTGAAAAACTCAAGCAAATGAACCAAGAGTTGCAGAAGAAACAGAGAGAGATAATGGAAACACAGAAAAATCAGGTTTTAGAGAAGCTGAAATGTCAGTTGGGTGGCAAAAGACTCTGCTTAAGAAGAACACTGACTGGGCCTTGGTAG | 1230 | 44.15 | MNFRNFEDMPPGEGTMAKAEGNFALARQSSIYSLTFDEIQNTWSGLGKDVGSMNMDELLKNIWTAEESQALTSAAAATSGAGSAFGGNLQRQGSLTLPRTISQKTVDEVWKGLSKEHTSVRDGSGIEAMPPRQPTLGEVTLEEFLARAGVVREEPQHIERPCGFYGGLSREDNNGGLALGMLMGNQMADNKNIVSNQNQQNSVFLGTGVRRSSQQQQQQQQPLFPKPATVTFASSMNLGNNPQLSTGSGTNMGVTSKPPLYNPLIQSSGIGTIGLGTRGVTVASRSPTSTISSDVITKNSIDTFSYSPVPVPYSFGRGRRSNGVVEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVEKLKQMNQELQKKQREIMETQKNQVLEKLKCQLGGKRLCLRRTLTGPW | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36798272 | 36802121 | + | Sed0015009.1 | Sed10g2023 | 728527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g2023 | 409 | Pfam | bZIP transcription factor | 331 | 382 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2023 | 409 | Coils | Coil | 350 | 384 | - | - | |
Sed10g2023 | 409 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 329 | 380 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2023 | 409 | SUPERFAMILY | Leucine zipper domain | 331 | 380 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2023 | 409 | CDD | bZIP_plant_BZIP46 | 331 | 385 | - | - | |
Sed10g2023 | 409 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 27 | 407 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Sed10g2023 | 409 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | 329 | 386 | - | - | |
Sed10g2023 | 409 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 334 | 349 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2023 | 409 | SMART | brlzneu | 327 | 392 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2023 | 409 | Gene3D | - | 329 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1476 | Sed-Chr4:29547341 | Sed10g2023 | Sed-Chr10:36798272 | 3.30E-24 | dispersed | |
Sed10g2023 | Sed-Chr10:36798272 | Sed11g0945 | Sed-Chr11:23811673 | 6.90E-84 | dispersed | |
Sed10g2023 | Sed-Chr10:36798272 | Sed11g0943 | Sed-Chr11:23811673 | 6.90E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39852 | PF00170 | bZIP_1 | 2.10E-11 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g2023 | K14432 | - | csv:101203950 | 611.298 |