Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2023 ATGAATTTCAGGAACTTTGAGGATATGCCACCAGGAGAAGGCACAATGGCAAAGGCAGAAGGAAATTTCGCATTGGCTCGACAGTCTTCCATATACTCTTTAACGTTCGACGAGATTCAGAACACATGGAGTGGACTCGGAAAGGATGTCGGCTCGATGAATATGGATGAACTTCTGAAAAACATATGGACTGCTGAAGAATCTCAGGCATTGACATCTGCTGCTGCTGCTACAAGTGGAGCTGGAAGCGCCTTCGGTGGGAACTTGCAGAGGCAAGGTTCGTTAACTTTACCCCGAACGATAAGTCAGAAAACGGTTGATGAAGTTTGGAAAGGCTTGAGTAAAGAGCATACTAGCGTTCGAGATGGCAGTGGAATTGAGGCAATGCCTCCACGACAACCGACATTAGGGGAGGTGACTTTGGAGGAGTTTTTAGCTAGAGCAGGAGTGGTAAGAGAAGAACCTCAACATATTGAGAGGCCTTGTGGATTTTATGGTGGATTATCAAGAGAAGACAATAATGGTGGTTTGGCTCTTGGGATGCTTATGGGAAATCAGATGGCTGATAACAAAAATATAGTTTCTAATCAGAATCAACAAAATTCAGTGTTTTTAGGAACAGGAGTTAGAAGGTCTTCCCAGCAGCAGCAGCAACAGCAGCAGCCACTTTTCCCCAAACCAGCTACTGTGACTTTTGCTTCATCAATGAATTTAGGAAATAATCCCCAGCTTTCTACTGGATCTGGAACTAATATGGGCGTGACCTCGAAACCTCCTTTATACAACCCTTTAATCCAAAGCAGCGGCATCGGTACGATTGGTTTGGGCACGAGAGGCGTAACTGTTGCTTCGAGATCTCCTACAAGTACAATATCATCTGATGTGATTACAAAAAACAGCATAGACACATTTTCTTATTCACCAGTTCCAGTTCCTTATTCATTTGGTCGGGGACGACGAAGTAACGGAGTTGTGGAGAAAGTTGTCGAGAGGAGGCAACGAAGAATGATCAAGAACAGAGAGTCAGCTGCAAGATCACGAGCTCGAAAACAGGCATACACCTTGGAGCTTGAAGCAGAAGTTGAAAAACTCAAGCAAATGAACCAAGAGTTGCAGAAGAAACAGAGAGAGATAATGGAAACACAGAAAAATCAGGTTTTAGAGAAGCTGAAATGTCAGTTGGGTGGCAAAAGACTCTGCTTAAGAAGAACACTGACTGGGCCTTGGTAG 1230 44.15 MNFRNFEDMPPGEGTMAKAEGNFALARQSSIYSLTFDEIQNTWSGLGKDVGSMNMDELLKNIWTAEESQALTSAAAATSGAGSAFGGNLQRQGSLTLPRTISQKTVDEVWKGLSKEHTSVRDGSGIEAMPPRQPTLGEVTLEEFLARAGVVREEPQHIERPCGFYGGLSREDNNGGLALGMLMGNQMADNKNIVSNQNQQNSVFLGTGVRRSSQQQQQQQQPLFPKPATVTFASSMNLGNNPQLSTGSGTNMGVTSKPPLYNPLIQSSGIGTIGLGTRGVTVASRSPTSTISSDVITKNSIDTFSYSPVPVPYSFGRGRRSNGVVEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVEKLKQMNQELQKKQREIMETQKNQVLEKLKCQLGGKRLCLRRTLTGPW 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36798272 36802121 + Sed0015009.1 Sed10g2023 728527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2023 409 Pfam bZIP transcription factor 331 382 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2023 409 Coils Coil 350 384 - -
Sed10g2023 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 329 380 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2023 409 SUPERFAMILY Leucine zipper domain 331 380 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2023 409 CDD bZIP_plant_BZIP46 331 385 - -
Sed10g2023 409 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 27 407 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Sed10g2023 409 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 329 386 - -
Sed10g2023 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 334 349 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2023 409 SMART brlzneu 327 392 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2023 409 Gene3D - 329 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1476 Sed-Chr4:29547341 Sed10g2023 Sed-Chr10:36798272 3.30E-24 dispersed
Sed10g2023 Sed-Chr10:36798272 Sed11g0945 Sed-Chr11:23811673 6.90E-84 dispersed
Sed10g2023 Sed-Chr10:36798272 Sed11g0943 Sed-Chr11:23811673 6.90E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39852 PF00170 bZIP_1 2.10E-11 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2023 K14432 - csv:101203950 611.298