Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2027 ATGTGGAGAAATGGAGCGACCCACGATGAATCGACGGGCCTTAATGGGGTTTCTGGATCGAGAAAGAGGAAATTGACCCGTTTCGTGCCTCTGTTCGTGGCGATTGTGGTTATAGCAGAGATCGCGTCTTTAAGTCGGCTTGACATGGCTAAAAATGCGGCTATGGTGGATTCTTGGGTCGATTTGTTCCATGGATCGCAGGTTTTGCGAGAAGGGAGTGAAGGGTTTGGTGAAATGGGGAGTGGAATAATGGCGGTTGATGATGGAGGAGTTGATTCTGTCAGCTGTGAGGAGTGGTTGGAGAAGGAGGATGCTGTTGAGTATTCGAGGGATTTCAACAGGGAACCTGTTTTGGTTTCTGGTTCTGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTCAATCCTGGTCAAGAACCTGATGCTGCATTGGGGTCACCTCAACAAGGTAGAGTTGCTAGCGTACTTCGATCAATGGAATCCTCTCATTACTATCCAGAGAATAATATTGCCATGGCTAGACGGAAGGGTTACTCTGTGGTTATGACCACTAGTCTATCATCAGATGTTCCTGTTGGATATTTTTCCTGGGCAGAATACGATATAATGGCACCGGTTCAGCCAAAGACTGAGCCTGCCCTTGCAGCTGCCTTTATTTCAAATTGCGGTGCCCGCAACTTCCGCTTGCAAGCTCTTGAGGCACTTGAGAAGTTCAATGTCAAAATTGATTCATATGGAAGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTAGCTTTTGAGAATTCCAACGAGGAAGATTATGTCACTGAAAAGTTTTTCCAATCTCTTGTTGCAGGAACTATTCCCGTGGTCGTTGGCACTCCAAATATTGCGGAGTTCGCTCCTTCTCCTGAGTCGTTTTTGCATATCAAGGAAATTTCCGATGTTGAGTCAATCGCCAAGTCCATGAAATACCTTGCTGAAAATCCCAAAATGTACAATCAGTCGCTAAGATGGAAGTATGATGGTCCATCTGATTCTTTCAAGGCTCTTGTAGACATGGCAGCAGTACACTCATCATGCCGCCTTTGCATCCACTTGGCGACCATCATCCACGAGAAAGAAGAAAGTAGTTCCGGGTTCAAAAAACGAACGTGCAAGTGCTCTCGCGGCTCTGAAACCGTGTACCATTTATACGTGAGGGAGAGAGGGAGGTTTACAATGCAATCCATTTTCTTGAGGTCAGGGAATTTGACATTAGAGGCTTTAGAATCAGAAGTACTCGAAAAATTCAATTCTTTGAAACACGTACCGATATGGAAGCTAGAACGACCCGAAAGCATAAGAGGAAGAGATGAACTAAAAATATACAGAATATATCCTGTTGGGTTGACTCAGAAGCAGGCTTTGTATTCCTTCAGATTCAAAGGTAATGATGATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAAATCATATTTGTCTGA 1521 44.71 MWRNGATHDESTGLNGVSGSRKRKLTRFVPLFVAIVVIAEIASLSRLDMAKNAAMVDSWVDLFHGSQVLREGSEGFGEMGSGIMAVDDGGVDSVSCEEWLEKEDAVEYSRDFNREPVLVSGSEKEWRTCDVGCQFGFNPGQEPDAALGSPQQGRVASVLRSMESSHYYPENNIAMARRKGYSVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALEALEKFNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGTPNIAEFAPSPESFLHIKEISDVESIAKSMKYLAENPKMYNQSLRWKYDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEESSSGFKKRTCKCSRGSETVYHLYVRERGRFTMQSIFLRSGNLTLEALESEVLEKFNSLKHVPIWKLERPESIRGRDELKIYRIYPVGLTQKQALYSFRFKGNDDFRTHIETHPCAKMEIIFV 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36821595 36827190 + Sed0008599.1 Sed10g2027 728531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2027 506 Gene3D - 161 354 IPR038577 -
Sed10g2027 506 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 55 478 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Sed10g2027 506 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 163 355 - -
Sed10g2027 506 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 216 378 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Sed10g2027 506 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 108 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2027 Sed-Chr10:36821595 Sed13g0494 Sed-Chr13:3370297 8.20E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2027 K00753 - csv:101205170 899.812