Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2037 ATGGTGGAATCGAACCTCAGTTACGAAGAATGTCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGCAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCATCTCCGACGAAACAGCTTAAGCGTCCTCGCCAGCCACTCGACCTTTCGTCCCTGAGTGTGAGACGGTCCAACCGTTGTGCCGATAGGCCCCCTCCGAGCTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGGACTTATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAACGAGTATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGAATCTAGTTATCCAAGTTTTGTGAAGCCCATGCTTCAGTCTCATGTCACAGGGGGATTTTGGCTGGGTCTTCCGAATCATTTTTGCAAGCAACACCTTCCCCATGAGGATGAAATGATTACTTTGGTGGACGAGGACGAAAATGAGTTCCAAGCAAAATACCTCGCTGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTGTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCATACAATTTGGAAGACAGAGACAATACCAATGATGATTCTGATGACAAGCAATTGGAAAGAAGTGGTAAAAGAAATAGATCATCAGGGCATAAAATCAAAGCAAATAATTCTGCAGATAAAGCAGATGAAGGCAAAAGTTCTGAGGTTTCCCCATTGGAAAAGAGTGGCAAAAGAAATACTAGATCATCAGGGCACAAAATCAATGCAAATAATTGTGCAGATAAAGGCGAAAGTTCTGATGTTTCCCCATTGGAAAAAAGTGGCAAAAAAACTACTACTACTAGATTATCAGGGCATAAAATCAATGCAAAGAATTCTGCAGATAAAGCAGATAAAGACAAGAGTTTTGATGCTTCCCTATTGGAAAAGAGTGGGAAAAGAACTACTAGATCAGCCAGTAAAGGTAAGATGTAG 1068 42.51 MVESNLSYEECRRQRLEENKKRMQELNLNKLADALKSSSPKSSPTKQLKRPRQPLDLSSLSVRRSNRCADRPPPSYKEVPIEPLPGIRRTYQRRDLLNRVYASHEERVYAIDRARDLQSSLESSYPSFVKPMLQSHVTGGFWLGLPNHFCKQHLPHEDEMITLVDEDENEFQAKYLADKTGLSGGWRGFSIDHQLVDGDAVVFHLTKPTEFKVYIIRAYNLEDRDNTNDDSDDKQLERSGKRNRSSGHKIKANNSADKADEGKSSEVSPLEKSGKRNTRSSGHKINANNCADKGESSDVSPLEKSGKKTTTTRLSGHKINAKNSADKADKDKSFDASLLEKSGKRTTRSASKGKM 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36885679 36891877 - Sed0001768.1 Sed10g2037 728541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2037 355 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677(InterPro)
Sed10g2037 355 MobiDBLite consensus disorder prediction 224 243 - -
Sed10g2037 355 MobiDBLite consensus disorder prediction 32 81 - -
Sed10g2037 355 Coils Coil 6 33 - -
Sed10g2037 355 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Sed10g2037 355 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677(InterPro)
Sed10g2037 355 MobiDBLite consensus disorder prediction 320 347 - -
Sed10g2037 355 CDD B3_DNA 126 217 IPR003340 GO:0003677(InterPro)
Sed10g2037 355 MobiDBLite consensus disorder prediction 280 295 - -
Sed10g2037 355 MobiDBLite consensus disorder prediction 224 355 - -
Sed10g2037 355 MobiDBLite consensus disorder prediction 251 278 - -
Sed10g2037 355 MobiDBLite consensus disorder prediction 32 65 - -
Sed10g2037 355 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 220 IPR044837 -
Sed10g2037 355 MobiDBLite consensus disorder prediction 303 319 - -
Sed10g2037 355 Gene3D - 103 220 IPR015300 -
Sed10g2037 355 SMART B3_2 128 219 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2037 Sed-Chr10:36885679 Sed11g0972 Sed-Chr11:24432551 6.40E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39855 PF02362 B3 3.40E-16 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2037 - - - 0.0