Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g2037 | ATGGTGGAATCGAACCTCAGTTACGAAGAATGTCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGCAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCATCTCCGACGAAACAGCTTAAGCGTCCTCGCCAGCCACTCGACCTTTCGTCCCTGAGTGTGAGACGGTCCAACCGTTGTGCCGATAGGCCCCCTCCGAGCTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGGACTTATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAACGAGTATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGAATCTAGTTATCCAAGTTTTGTGAAGCCCATGCTTCAGTCTCATGTCACAGGGGGATTTTGGCTGGGTCTTCCGAATCATTTTTGCAAGCAACACCTTCCCCATGAGGATGAAATGATTACTTTGGTGGACGAGGACGAAAATGAGTTCCAAGCAAAATACCTCGCTGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTGTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCATACAATTTGGAAGACAGAGACAATACCAATGATGATTCTGATGACAAGCAATTGGAAAGAAGTGGTAAAAGAAATAGATCATCAGGGCATAAAATCAAAGCAAATAATTCTGCAGATAAAGCAGATGAAGGCAAAAGTTCTGAGGTTTCCCCATTGGAAAAGAGTGGCAAAAGAAATACTAGATCATCAGGGCACAAAATCAATGCAAATAATTGTGCAGATAAAGGCGAAAGTTCTGATGTTTCCCCATTGGAAAAAAGTGGCAAAAAAACTACTACTACTAGATTATCAGGGCATAAAATCAATGCAAAGAATTCTGCAGATAAAGCAGATAAAGACAAGAGTTTTGATGCTTCCCTATTGGAAAAGAGTGGGAAAAGAACTACTAGATCAGCCAGTAAAGGTAAGATGTAG | 1068 | 42.51 | MVESNLSYEECRRQRLEENKKRMQELNLNKLADALKSSSPKSSPTKQLKRPRQPLDLSSLSVRRSNRCADRPPPSYKEVPIEPLPGIRRTYQRRDLLNRVYASHEERVYAIDRARDLQSSLESSYPSFVKPMLQSHVTGGFWLGLPNHFCKQHLPHEDEMITLVDEDENEFQAKYLADKTGLSGGWRGFSIDHQLVDGDAVVFHLTKPTEFKVYIIRAYNLEDRDNTNDDSDDKQLERSGKRNRSSGHKIKANNSADKADEGKSSEVSPLEKSGKRNTRSSGHKINANNCADKGESSDVSPLEKSGKKTTTTRLSGHKINAKNSADKADKDKSFDASLLEKSGKRTTRSASKGKM | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36885679 | 36891877 | - | Sed0001768.1 | Sed10g2037 | 728541 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g2037 | 355 | ProSiteProfiles | B3 DNA-binding domain profile. | 128 | 219 | IPR003340 | GO:0003677(InterPro) | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 224 | 243 | - | - | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 32 | 81 | - | - | |
Sed10g2037 | 355 | Coils | Coil | 6 | 33 | - | - | |
Sed10g2037 | 355 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 218 | IPR015300 | - | |
Sed10g2037 | 355 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677(InterPro) | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 320 | 347 | - | - | |
Sed10g2037 | 355 | CDD | B3_DNA | 126 | 217 | IPR003340 | GO:0003677(InterPro) | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 280 | 295 | - | - | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 224 | 355 | - | - | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 251 | 278 | - | - | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 32 | 65 | - | - | |
Sed10g2037 | 355 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 220 | IPR044837 | - | |
Sed10g2037 | 355 | MobiDBLite | consensus disorder prediction | 303 | 319 | - | - | |
Sed10g2037 | 355 | Gene3D | - | 103 | 220 | IPR015300 | - | |
Sed10g2037 | 355 | SMART | B3_2 | 128 | 219 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g2037 | Sed-Chr10:36885679 | Sed11g0972 | Sed-Chr11:24432551 | 6.40E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39855 | PF02362 | B3 | 3.40E-16 | CL0405 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g2037 | - | - | - | 0.0 |