Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2039 ATGATTGTGAAGGAAGTTGGAGGAATCGTATTTCCAAAAGCTGCCCAAAATCTTCGCAACGACTTCGTTAGAAGCAATAAACTAAGTAAAAATCGCGCTTCGAATCCAAACCCTGCCATGAAAGCAGAGCTCGAGGTGGAGACGGCGATGGGCGATTGTAAACGAGTTGCGGTGACGACGGCGGCGAGCAATGCTGGTTGCATGTCGAAGAGGCGGAGAATTGCCGGTTCGCCGGAGAGATTGCGACCGTCGGCGTCTCGGTCTCGGTCTCGTTTGGAGAAGAGGAGTTCCGTTGGCATTGTCGTCGGAGGTGATGTTTGTGATCAGTTTCCGGTTTCTTGTAGCTCCGGTAACGACTGCCGGAAGGTCACCGCCGAGAAATTCGAAGATCTAGAGCAGACCAAGAGCTTCGAAACCGTAGAGTCTACTCGCGTTAACGGCATTCAAAGAGAGAGCACTCCGACGAGCAATTTCCACGAAGAATCCGACGGAATGGAAACTCCGGCGACTGAAAAACAGAAGCCAGCCGATCCTCCGGTGAAGACGCCGCCGATCTCCGAGATTGAAGATTTCTTCGCCGAAGCTGAGAAGTACGAACAGAAGCGCTTTTCAGTGAAGTACAATTTCGATATAGTGATGGATGTGCCATTGGAAGGGCGATACCAGTGGATTCGTTTGAAGCCATGA 687 51.24 MIVKEVGGIVFPKAAQNLRNDFVRSNKLSKNRASNPNPAMKAELEVETAMGDCKRVAVTTAASNAGCMSKRRRIAGSPERLRPSASRSRSRLEKRSSVGIVVGGDVCDQFPVSCSSGNDCRKVTAEKFEDLEQTKSFETVESTRVNGIQRESTPTSNFHEESDGMETPATEKQKPADPPVKTPPISEIEDFFAEAEKYEQKRFSVKYNFDIVMDVPLEGRYQWIRLKP 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36899216 36901001 - Sed0006444.1 Sed10g2039 728543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2039 228 MobiDBLite consensus disorder prediction 141 163 - -
Sed10g2039 228 MobiDBLite consensus disorder prediction 73 94 - -
Sed10g2039 228 MobiDBLite consensus disorder prediction 141 184 - -
Sed10g2039 228 MobiDBLite consensus disorder prediction 69 95 - -
Sed10g2039 228 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 50 228 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Sed10g2039 228 Gene3D p27 166 228 IPR044898 -
Sed10g2039 228 Pfam Cyclin-dependent kinase inhibitor 186 225 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2039 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3394 Sed-Chr5:43070158 Sed10g2039 Sed-Chr10:36899216 9.30E-17 dispersed
Sed07g0219 Sed-Chr7:1824907 Sed10g2039 Sed-Chr10:36899216 4.70E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011348 2 1 1 2 0 1 2 0 1 1 1 1 2 1 1 2 1 0 2 0 1 1 1 1 1 0 1 1 1 1 31