Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2040 ATGGAGAAATCCGTTCTTCTCCGTTCTCTCACCTGTTCATCCATGGTCTGCAACAAAATCTTCTTCCGTTCAGCCCACAGCTTTTCTCGCTCTGCATTATCTCCCTCTTCGTCGCTTGTTTCGAGCAAGTTTCGCCGTCTCAATCCCTCCTTCGCCCGCCGCTCCTTGCCCCGCCGTCAATGGCGGTTGCTGCCGGCTTCTTCCGGTTCCGGTTCGTTTCATCTTCCAAGACAGTTTTCGTCTCTGGCTCCGCGTGCTGCTGCTTCTTCCCCTGCGCAATCCCCTCCAGAGTCTGCAGAAGTATCCGACGAGGTTGCCGAGAAGCTTGGATTCGAGAAGGTCTCTGAGGAATTTATTGGTGAGTGCAAATCAAAAGCTGTGCTTTTTAGACATAAGAAGACTGGTGCGGAGGTGATGTCAGTGTCGAATGATGATGAGAATAAGGTCTTTGGGATCGTATTTCGCACACCGCCGAATGATTCTACTGGAATTCCACACATTTTAGAACACAGTGTATTGTGTGGATCAAGGAAGTATCCAGTAAAGGAGCCATTTGTTGAATTATTGAAAGGAAGCTTACATACATTCTTAAATGCATTTACATATCCTGATAGGACATGCTACCCAGTTGCTTCAACAAATTCTAAGGATTTTTATAATCTTGTTGATGTGTACTTGGACGCGGTCTTCTTTCCTAAGTGTGTGGAGGACTTTAAGACATTTCAACAGGAGGGTTGGCATTATGAACTAAACGATCCCTCAGAAGATATATCTTATAAAGGGGTGGTGTTCAATGAAATGAAAGGAGTTTACTCCCAACCTGACAACATCTTAGGACGAGTTACTCAACAGGCTCTTTTTCCAGACAATACGTATGGAGTTGATAGTGGAGGCGACCCACGAGTTATTCCCAAGCTTACATTTGAGGAATTCAAGGAATTTCACCGTAAGTTCTACCACCCAGGAAATGCTAGGATCTGGTTTTATGGAGATGATAATCCAGTTGAACGTCTGCGCATTCTCAAAGAGTATTTAGATCTATTTGATGCAAGTCCAGTTTCCAACCAGTCTAAGATTGAGCAACAAAGGCTATTCTCAGAGCCGGTTAGAATTGTTGAGAAGTATCCTTCTGGTGATGGAGGTGATTTGAAGAAAAAGCATATGGTATGCATTAATTGGTTGCTTTCTGAAAAGCCATTGGACTTAGAAACTGAGCTTGCCCTTGGATTTTTGGACCATCTTATGCTGGGAACCCCTGCTTCTCCACTGAGAAAAATCTTACTGGAGAGTGGTCTAGGAGATGCCATAGTTGGTGGTGGGATTGAAGATGAGCTTTTACAACCACAGTTTAGCATTGGGTTGAAGGGTGTTTTGGACGATGACATTCCAAAAGTAGAAGAATTAATTATAAATACCTTTAAGAAATTAGTAGAGGAAGGTTTCGACAACGATGCAGTAGAGGCTTCCATGAATACCATTGAGTTTTCCCTGCGGGAAAATAACACTGGTTCTTTCCCTCGAGGCTTATCACTTATGCTTCGATCCATCGGTAAATGGATATATGATATGAATCCATTTGAACCATTGAAGTACGAAGAGCCTCTGAAGGCCTTGAAAACCAGAATAGCTGCGGAAGGACCCAAAGCTGTTTTCTCTCCTTTGATAGAGAAATTCATTCTGAACAACCCTCATCGCGTAACTATTGAGATGCAGCCTGATCCAGAGAAAACTTCTCGTGATGAAGCAGCTGAAAAAGAAATCTTGCAGAAAGTTAAAGAAAGCATGACTGAAGAAGATCTTGCTGAACTAGCACGTGCTACGCAGGAATTACGGCTAAAGCAGGAAACACCTGATCCACCAGAAGCTTTAAAATGTGTTCCATGCCTTTGCCTTGAAGATATTCCTAAAGAACCTATTCATGTTCCAACTGAGGTGGGAAATGTCAATGGAGTAACCGTTTTACAACATGAACTCTTCACAAATGATGTTCTTTATTCTGAAGTTGTTTTTGATATGAGTTCACTGAAGCAGGAGCTTCTTCCTTGGGTACCTTTGTTTTGTCAATCATTGTTAGAGATGGGCACAAAAGACTTGACTTTTGTGCAACTTAATCAGTTAATTGGAAGGAAAACTGGTGGGATATCAGTTTATCCATTTACGTCATCTGTACGTGGCGATGACAAGGCATGCACTCATATGATTGTCAGAGGCAAGGCTATGTCAGGATGTGCTGAAGACTTGTTCAACCTGATGAACTGCATTCTTCAAGAAGTACAGTTTACAGATCAGCAGCGGTTTAAACAGTTTGTATCTCAGAGCAAATCACGAATGGAGAATCGGTTAAGAGGTAGTGGCCATGGAATAGCTGCTGCTAGGATGGATGCAAAGTTGAACAGTGCCGGCTGGATATCTGAACAAATGGGTGGTCTCAGTTATCTGGAATTTCTGCAAACTCTTGAAGAGAAAGTTGATCAAAACTGGGCTGAAATTTCTTCATCGCTTGAGGAAATCCGCCAATCCTTACTTTCAAGGAAAAATTGCCTAGTTAACATTACTGCTGATGGCAAAAATCTCCTGAAGTCGGAGAAGTTCATTGGCAAATTTCTTGATTTGCTACCTAACCAACCAATCATTAAGAGCAATAGTTGGAATGCGCGGCTTTCTTCGGATAACGAAGCCATTGTGATACCTACTCAGGTTAATTACGTCGGAAAAGCAGCTAACCTTTATGAAACGGGCTATGAACTTAATGGAAGCGCCTACGTTATTTCGAAGTTTATTAGTAATACATGGCTCTGGGATCGTGTTAGAGTAAGTGGCGGTGCTTATGGAGGATTTTGTGATTTTGATACTCATTCAGGAGTGTTCTCCTTCTTATCTTATCGTGACCCAAATCTGTTAAAGACGCTCGATGTATATGATGGAACTGTCGATTTTCTACGTGAATTGGAATTGGACGGAGATACTCTAGCAAAAGCCATAATTGGAACAATTGGAGATGTCGATTCTTACCAGCTTCCTGATGCTAAAGGTTACAGCAGCTTGTTGCGGCATTTATTGGGAATTACAGAAGAAGAAAGGCAAAGGAGAAGGGAAGAAATATTAGCAACCAGCTTGAAGGACTTCAAGAACTTCGCGGACGCACTCGAGGCGGTCAGAAACAAAGGAGTGGTAGTGTCTGTCGCATCTCCCGAAGACGTCGAAGCCGCACACAACGAACGCCCGAGCTTTTTTCAAGTGAAGAAAGCCCTCTAA 3255 42.8 MEKSVLLRSLTCSSMVCNKIFFRSAHSFSRSALSPSSSLVSSKFRRLNPSFARRSLPRRQWRLLPASSGSGSFHLPRQFSSLAPRAAASSPAQSPPESAEVSDEVAEKLGFEKVSEEFIGECKSKAVLFRHKKTGAEVMSVSNDDENKVFGIVFRTPPNDSTGIPHILEHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNSKDFYNLVDVYLDAVFFPKCVEDFKTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRVTQQALFPDNTYGVDSGGDPRVIPKLTFEEFKEFHRKFYHPGNARIWFYGDDNPVERLRILKEYLDLFDASPVSNQSKIEQQRLFSEPVRIVEKYPSGDGGDLKKKHMVCINWLLSEKPLDLETELALGFLDHLMLGTPASPLRKILLESGLGDAIVGGGIEDELLQPQFSIGLKGVLDDDIPKVEELIINTFKKLVEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDMNPFEPLKYEEPLKALKTRIAAEGPKAVFSPLIEKFILNNPHRVTIEMQPDPEKTSRDEAAEKEILQKVKESMTEEDLAELARATQELRLKQETPDPPEALKCVPCLCLEDIPKEPIHVPTEVGNVNGVTVLQHELFTNDVLYSEVVFDMSSLKQELLPWVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSVRGDDKACTHMIVRGKAMSGCAEDLFNLMNCILQEVQFTDQQRFKQFVSQSKSRMENRLRGSGHGIAAARMDAKLNSAGWISEQMGGLSYLEFLQTLEEKVDQNWAEISSSLEEIRQSLLSRKNCLVNITADGKNLLKSEKFIGKFLDLLPNQPIIKSNSWNARLSSDNEAIVIPTQVNYVGKAANLYETGYELNGSAYVISKFISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTVDFLRELELDGDTLAKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGITEEERQRRREEILATSLKDFKNFADALEAVRNKGVVVSVASPEDVEAAHNERPSFFQVKKAL 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36904838 36920820 - Sed0020763.1 Sed10g2040 728544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2040 1084 Gene3D - 355 593 - -
Sed10g2040 1084 Pfam Peptidase M16C associated 570 819 IPR013578 GO:0006508(InterPro)
Sed10g2040 1084 SMART M16C_assoc_2 570 819 IPR013578 GO:0006508(InterPro)
Sed10g2040 1084 SUPERFAMILY LuxS/MPP-like metallohydrolase 629 879 IPR011249 GO:0046872(InterPro)
Sed10g2040 1084 FunFam Presequence protease, mitochondrial 356 593 - -
Sed10g2040 1084 SUPERFAMILY LuxS/MPP-like metallohydrolase 362 627 IPR011249 GO:0046872(InterPro)
Sed10g2040 1084 FunFam presequence protease 1, chloroplastic/mitochondrial 93 353 - -
Sed10g2040 1084 Pfam PreP C-terminal domain 891 1063 - -
Sed10g2040 1084 PANTHER PRESEQUENCE PROTEASE 106 1083 - GO:0004222(PANTHER)|GO:0005739(PANTHER)|GO:0009507(PANTHER)|GO:0016485(PANTHER)
Sed10g2040 1084 Pfam Peptidase M16 inactive domain 305 491 IPR007863 -
Sed10g2040 1084 Pfam Insulinase (Peptidase family M16) 158 235 IPR011765 -
Sed10g2040 1084 Gene3D - 602 1056 - -
Sed10g2040 1084 SUPERFAMILY LuxS/MPP-like metallohydrolase 110 352 IPR011249 GO:0046872(InterPro)
Sed10g2040 1084 FunFam Presequence protease 1 876 1056 - -
Sed10g2040 1084 SUPERFAMILY LuxS/MPP-like metallohydrolase 887 1064 IPR011249 GO:0046872(InterPro)
Sed10g2040 1084 Gene3D - 637 886 - -
Sed10g2040 1084 Gene3D - 91 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2040 K06972 - - csv:101206839 1989.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g436 . . . . . . . . Cmo19g00631 Cmo11g01352 . . . . Sed10g2040 Cpe04g00272 Cpe15g00496 Bhi05g01130 Tan02g0898 Cmetu01g1020 . Hepe02g0577 . . Cla02g00589 Cam02g0621 Cec02g0620 . Clacu02g0619 Cmu02g0614 . Cone12ag1102 . . . . Csa07g00770 . Cme01g00039 Blo04g00491 . . Bda14g00521 Bpe15g00893 . Bma03g00522 . . . . Cma11g01760 Cma19g00612 . Car19g00465 . . . . . . . . . . . . . . . . Lsi11g01018 . Chy01g00045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34