Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2068 ATGAAAGAGGAATCAGGTGGAGGAGCTTTGGTGATGATGGAGCGGCGGAGCGGATTGAATCGGAAGCGATTCGGAGCTTATTTGCAGTCAGATCCGGCGATTATGGCCGGAGACGATAACGAATTCTCTACGCGGCATAGTAATTACTCCGCCGCGACAAGTCCGGCGTATAACTACGACAAATCTCCGGCGAGCGGTGGTGACGCTTCGCCGTACATGATGTCGCCGTGGAATCAGTCGGCTTCTCCTTATTCTAAATCGCCGTGGATTCTTTCGTCGAGGATGAATTTGTACGATGATGATTTCTACTCGCGGAATGGACTGATCGGATCTCTGGTTCGAGAGGAAGGCCATGTGTATTCGTTGGCGGTGGTTGGCGATTTGTTGTATACTGGATCTGATAGCCGGAACATTCGTGTTTGGAAGAATCTGAAGGAGTTTACTGGATTCAAATCGAATAGTGGATTGGTGAAGGCGATTATCTTTTGCGGTGATAGAATTTTCACCGGACATCAAGACGGGAAGATTCGGATCTGGAAAGTTTCGTCGAAGGATCCGAAATCTCATAGCCGAATCGGAAGCTTGCCGACGATGAAGGAATTTGTTAAGAGCTCGATGAATCCGAAGAATTACGTGAAAGTCCGGCGAAATCGCAACGTGCTCCGTATCAAGCATTTCGACGCTGTTTCATCGATGAGTCTGAACGAGGAGTTAGGGCTTTTGTACTCTGGATCTTGGGACAAAACGATGAAGGTTTGGCGAATCGCAGATTCGAAATGCCTGGAATCGATCGCCGCTCACGACGACGCCGTGAACGCCGTCGCGTCGGGATTTGTAGGCCTTGTGTTCACCGGATCTGCGGATGGAACGGTGAAGGTCTGGCGGAGGGAGTTGCAGGGGAAAGGAACGAAGCATTTTCTGGTTCAGGTGTTGCTGAAGCAGGAAAATGCGGTGACGGCGTTGGCCGTGAACCGGTCGTCGGCGGTTTTGTACTGCGGCTCATCGGACGGAGTTGTGAATTATTGGGAGAGCGAGAAGCAGTTATCTCACGGCGGCGTCCTCCGCGGCCATAGACTGGCGGTGCTGTGCTTAGCGACGGCCGGAAACTTGGTGCTCAGCGGATCGGCGGACAAAAACATTTGCGTGTGGCGGAGAGACGGGGGCGGATCTCACTCGTGTCTTTCAATTCTCACCGGCCACACAGGACCGGTCAAATGCTTAGCGGTTAAGGAAGGCGAAGAAGAATCGCCGTCGTCGCCGGAGGAAACCGAGACTAGTAAGCTGAACGGCGGAGGGCGACGGTGGATAGTGTACAGTGGAAGCTTGGACCGGTCGGTGAAGGTGTGGCGCGTGGAGGAGAACGCGCCGGAGCTGTTCCCGGAGCGGCCGTACAAGTAG 1398 53.36 MKEESGGGALVMMERRSGLNRKRFGAYLQSDPAIMAGDDNEFSTRHSNYSAATSPAYNYDKSPASGGDASPYMMSPWNQSASPYSKSPWILSSRMNLYDDDFYSRNGLIGSLVREEGHVYSLAVVGDLLYTGSDSRNIRVWKNLKEFTGFKSNSGLVKAIIFCGDRIFTGHQDGKIRIWKVSSKDPKSHSRIGSLPTMKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAVSSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESIAAHDDAVNAVASGFVGLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQENAVTALAVNRSSAVLYCGSSDGVVNYWESEKQLSHGGVLRGHRLAVLCLATAGNLVLSGSADKNICVWRRDGGGSHSCLSILTGHTGPVKCLAVKEGEEESPSSPEETETSKLNGGGRRWIVYSGSLDRSVKVWRVEENAPELFPERPYK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37159376 37161718 - Sed0014039.1 Sed10g2068 728572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Sed10g2068 465 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Sed10g2068 465 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Sed10g2068 465 Gene3D - 305 460 IPR015943 GO:0005515(InterPro)
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 294 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 343 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 189 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 FunFam BnaA09g28200D protein 212 299 - -
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 383 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 255 - -
Sed10g2068 465 CDD WD40 116 450 - -
Sed10g2068 465 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 62 453 IPR045182 -
Sed10g2068 465 MobiDBLite consensus disorder prediction 411 432 - -
Sed10g2068 465 SUPERFAMILY WD40 repeat-like 111 456 IPR036322 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 257 295 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 390 450 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 105 142 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 143 180 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 347 384 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 304 343 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 SMART WD40_4 216 254 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Gene3D - 212 304 IPR015943 GO:0005515(InterPro)
Sed10g2068 465 Gene3D - 101 211 IPR015943 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 154 179 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 116 141 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 352 383 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 224 253 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 314 342 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515(InterPro)
Sed10g2068 465 Pfam WD domain, G-beta repeat 392 449 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0096 Sed-Chr1:885585 Sed10g2068 Sed-Chr10:37159376 1.20E-117 dispersed
Sed06g2163 Sed-Chr6:45404113 Sed10g2068 Sed-Chr10:37159376 7.70E-44 dispersed
Sed06g2164 Sed-Chr6:45409805 Sed10g2068 Sed-Chr10:37159376 1.40E-40 dispersed
Sed10g2068 Sed-Chr10:37159376 Sed11g0992 Sed-Chr11:24942400 4.20E-106 dispersed
Sed10g2068 Sed-Chr10:37159376 Sed01g2613 Sed-Chr1:20011698 8.60E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33