Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2070 ATGGCTTCTTCTTCCTCTGAACTTCCTCTGAAACCCATTCCCGGCGGCTATGGCTTCGCCTTCGTCGGAGCAATCAAAGACCGCTACGATTTCTTTTACTTCCAAGGCAGAGACGAATTCTTCCGATCAAGAATGCAGAAATACAACTCCACCGTTTTCCGGGCAAACATGCCGCCGGGACCCTTCATCTCCGGCGACTCCAGAGTCATCGTCCTCCTCGACGCCGTCAGCTTTCCGATCCTTTTCGACAACGAAAAGGTCGAAAAACGCAACATTCTCGACGGAACTTACATGCCCTCTTTGTCTTTCACCGGCGACATTCGTACCTGCGCTTATTTGGACCCGTCGGAAACAGAGCACTCGGTTCTCAAGTCCCTGTTTCTCCGATTCCTCGCCGGCCGCCGCGACAAATTCATCCCGCTTTTCCGCAGCTCCTTGTCGGAGATGTTCATCAAAATGGAGGATCAGTTGGCGGAGAAGAAGAACGCCGTGGCTCAGTTCAACAATATTAGCGATTCCATGTCGTTTGATTTCATGTTCCGGCTGTTCTCCGACGGCTCCCCTGACGCCAAACTCTCCGCCGATGGGCCTGGACTGTTCGATTTATGGGTTGCATTTCAACTTGCGCCGTTGGTTTCAGTTGGGGTTCCGAAGATTTTTTCATGCATCGAAGATTTCTTCATTCACACAATTCCTCTGCCTTTTTTCCCTGTCAAAAGCAGATACAGGAAGCTTTACAATGCGTTTTATTCCTCATCGGAATCGTTCCTCGCCGAAGCCGAAAAACAGGGGATTAACAGAGAGAAAGCCTGTCACAACTTAGTGTTCCTCGCCGGATTCAACGCCTACGGCGGAATGAAGGTACTTTTTCCGACATTGCTGAAATGGGTCGGCACCGCCGGGGAGGATCTTCACCGGAGGCTCGCCGGAGAAATCAGAGCCGCCGTGAAGGAAGCCGGAGGGTTGACTTTTGGTGCGATCGAGAAGATGGTTCTGTTGAAATCGGTGGTTTACGAAGCTCTGCGAATCGAGCCGCCGGTGCCGTTTCAGTACGGGAAGGCGAAGGAGGATTTGGTGATACAAAACCATGATTCGGCGTTTGAGATCAAGAAAGGGGAGACCATTGTCGGGTATCAGCCGTTTGCGACGAATGATCCGAAGGTTTTCGAGAAACCGGAGGTGTTCGTCGGCGATCGGTTCGTCGGAGAAGAAGGGGAGAGGCTTTTGAAGTATGTTTACTGGTCGAACGGCCGCGAGACGGAGTCGCCCACGGCCGGGGACAAGCAGTGTCCGGGGAAGGACCTGGTGGTGCTTATGTCTAGGGTTATTCTCGTGGAGTTCTTTCTCCGTTATAATACATTCTCCGTCCTCGTCACCGAGTTGCCCTTTGGTTGGTCCGTGAAGATCACGTCCTTGACCAAAGCTACTAGCAAAGTTTGA 1440 52.01 MASSSSELPLKPIPGGYGFAFVGAIKDRYDFFYFQGRDEFFRSRMQKYNSTVFRANMPPGPFISGDSRVIVLLDAVSFPILFDNEKVEKRNILDGTYMPSLSFTGDIRTCAYLDPSETEHSVLKSLFLRFLAGRRDKFIPLFRSSLSEMFIKMEDQLAEKKNAVAQFNNISDSMSFDFMFRLFSDGSPDAKLSADGPGLFDLWVAFQLAPLVSVGVPKIFSCIEDFFIHTIPLPFFPVKSRYRKLYNAFYSSSESFLAEAEKQGINREKACHNLVFLAGFNAYGGMKVLFPTLLKWVGTAGEDLHRRLAGEIRAAVKEAGGLTFGAIEKMVLLKSVVYEALRIEPPVPFQYGKAKEDLVIQNHDSAFEIKKGETIVGYQPFATNDPKVFEKPEVFVGDRFVGEEGERLLKYVYWSNGRETESPTAGDKQCPGKDLVVLMSRVILVEFFLRYNTFSVLVTELPFGWSVKITSLTKATSKV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37200964 37204974 + Sed0018122.1 Sed10g2070 728574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2070 479 Pfam Cytochrome P450 304 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 FunFam Allene oxide synthase, chloroplastic 8 477 - -
Sed10g2070 479 PRINTS E-class P450 group IV signature 383 401 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 PRINTS E-class P450 group IV signature 330 346 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 PRINTS E-class P450 group IV signature 430 448 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 PRINTS E-class P450 group IV signature 367 381 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 PANTHER CYTOCHROME P450 26 13 451 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed10g2070 479 CDD CYP74 42 475 - -
Sed10g2070 479 Gene3D Cytochrome P450 8 479 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2070 479 SUPERFAMILY Cytochrome P450 9 460 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2040 Sed-Chr5:33618777 Sed10g2070 Sed-Chr10:37200964 1.40E-104 dispersed
Sed10g1305 Sed-Chr10:28636039 Sed10g2070 Sed-Chr10:37200964 3.40E-144 dispersed
Sed10g2070 Sed-Chr10:37200964 Sed11g0996 Sed-Chr11:25044799 7.60E-143 dispersed
Sed10g2070 Sed-Chr10:37200964 Sed10g2071 Sed-Chr10:37214708 2.20E-182 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2070 K01723 - csv:101211324 783.482