Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2071 ATGACTTCATCTTCTTCCTCAGAACATCAACCAATCAAACAGAAATCCATTCCCGGCAGCTATGGCTTCCCTTTCATCGGACCCATCAAAGATCGCTACAATTACTTCTACATCCAAGGCAGAGATGAATTTTTCCGATCAAGAATGCTTAAATACAAATCCACCGTTTTCCGGGCAAACATGCCGCCGGGACCCTTCATCTCCGGCAACTCAAAAGTCGTCGTCCTTCTCGATGCCGTCAGCTTTCCGATCCTCTTCGACACAAACAAAGTCGAGAAAAGTAACGTCCTTGACGGAACTTTCATGCCGTCGGTAACCTTCACCGGCGGAATCCGCCCCTGCGCGTTTCTAGACCCATCGGAAGCAGAGCACTCTGTTTTTAAAAACCTCGTCCTCAAATTTCTTGCCTCCAATCACAATCAATTCATCCCTTTTTTTCAAAAATCGGTTTGGGAGATGTTTGATAAGATCGAAATTGAAATGGGAAAAAAGAAATTTCCAGATTTGAATCCGTTCACCGATTCGGCGGCGTTCGGTTTCATTTTCCGGTTGCTCGCCGGTCGGAAACCCGACCCGGAATTAAGCTCAAAGGGTCCGGGTTTTTTCAACCGTTGGTTGATGATGATGCTCGCTCCGTTGGGTACCGCCGGTTTGTCTAAATATCTCAGTTGCTTTGAAGATCTCATCATTCATACATTTCGTTTACCCTTCGCTTTAGTCAAAAGCGATTACAGGAAGCTTTTCGAAGAATTTGACCAGTATTCGCCGTCGGGTTCATTTCTAGACGAAGCAGAGAAACAGGGGATGGACAGAAAGAAAGCCTGCCACAATGTAATATTCCTGGCCGGATTCAACGCATACGCCGGAATGAAAGTGTTATTACCGATAATCCTCAACTGGGTCAGCGCCGCCGGGGAGGGACTTCACCGGAAACTCGCCGGAGAAATCAGAGCCGCCGTGGACGGCGGCGAACTCACATTCCAGGCGTTGGAGAAGATGACTCTGCTCAAATCCGTGATTTACGAAGTTCTGAGAATCGACCCGCCGGTGCCGTACCAGTACGCGAAAGCGAAGCAAGAGATCGTGATTCAGAGCCACGATTCGGCGTTTAGGATCAAGAAAGGGGAGATGATTTTTGGGTATCAGCCGTTTGCGACGAAAGATCCGAGGATTTTTGAGAAACCGGAAATTTTCGTCGGCGATAGGTTCGTCGGAGAAGCAGGGGAGAAGCTTTTGAAGTATGTTTACTGGTCGAACGGCCGGGAGACGGAGGCGCCGACGGCGGCGAACAAGCAGTGTCCGGCGAGGGATCTGGTGCTGTTGCTGTGTAAAGTGCTTTTGGTGGAACTGTTTCTCCGGTACGACACGTTCGCCGTTGACGGAACTCGGTCGTCGCTGGGTTGGTCCGTTAAGGTCAAGTCGTTGACCAAGTCAACTGCTAAGGCTGCCGCTTAA 1455 49.48 MTSSSSSEHQPIKQKSIPGSYGFPFIGPIKDRYNYFYIQGRDEFFRSRMLKYKSTVFRANMPPGPFISGNSKVVVLLDAVSFPILFDTNKVEKSNVLDGTFMPSVTFTGGIRPCAFLDPSEAEHSVFKNLVLKFLASNHNQFIPFFQKSVWEMFDKIEIEMGKKKFPDLNPFTDSAAFGFIFRLLAGRKPDPELSSKGPGFFNRWLMMMLAPLGTAGLSKYLSCFEDLIIHTFRLPFALVKSDYRKLFEEFDQYSPSGSFLDEAEKQGMDRKKACHNVIFLAGFNAYAGMKVLLPIILNWVSAAGEGLHRKLAGEIRAAVDGGELTFQALEKMTLLKSVIYEVLRIDPPVPYQYAKAKQEIVIQSHDSAFRIKKGEMIFGYQPFATKDPRIFEKPEIFVGDRFVGEAGEKLLKYVYWSNGRETEAPTAANKQCPARDLVLLLCKVLLVELFLRYDTFAVDGTRSSLGWSVKVKSLTKSTAKAAA 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37214708 37217231 + Sed0000461.1 Sed10g2071 728575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2071 484 CDD CYP74 46 473 - -
Sed10g2071 484 FunFam Allene oxide synthase, chloroplastic 11 480 - -
Sed10g2071 484 PANTHER CYTOCHROME P450 26 18 454 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed10g2071 484 Pfam Cytochrome P450 310 416 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 Gene3D Cytochrome P450 12 483 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 PRINTS E-class P450 group IV signature 386 404 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 PRINTS E-class P450 group IV signature 370 384 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 PRINTS E-class P450 group IV signature 333 349 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 PRINTS E-class P450 group IV signature 433 451 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g2071 484 SUPERFAMILY Cytochrome P450 12 463 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2071 K01723 - - csv:101211574 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2071 Sed-Chr10:37214708 Sed11g0996 Sed-Chr11:25044799 4.90E-129 dispersed
Sed10g2070 Sed-Chr10:37200964 Sed10g2071 Sed-Chr10:37214708 2.20E-182 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g531 . . . . . . . . Cmo19g00654 Cmo11g01328 . . . . Sed10g2071 . Cpe15g00516 Bhi05g01174 Tan02g0854 Cmetu01g2737 . Hepe02g0549 . . . . . . . . . . . . . . Csa07g00818 . Cme01g00009 . . . . . . . . . . . Cma11g01781 Cma19g00641 . Car19g00487 . . . . . . . . . . . . . . . . Lsi11g01051 . Chy01g00010 .
Vvi18g863 Blo01g01544 Blo12g00919 Bda01g00552 Bda03g00244 Bpe02g00411 . Bma04g00194 Bma01g02295 Cmo05g00223 . . . . Car12g00471 Sed10g2071 . Cpe07g00449 Bhi04g00292 Tan02g0854 Cmetu01g2737 . Hepe02g0549 . Lcy13g2017 Cla08g01524 Cam08g2015 Cec08g1590 Cco08g1726 Clacu08g1704 . Cre08g1486 Cone4ag1880 Cone7ag1789 Cone17ag1313 Cone20ag0160 . . . Cme03g01990 Blo17g00822 . Bda08g01303 . . Bpe05g00074 . . . . . Cma12g00501 Cma05g00217 Car05g00177 . Cpe11g00179 . . . . . . . . . . . . . . . Lsi08g01426 Csa02g02014 Chy03g01495 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003219 0 2 0 0 0 2 2 2 2 2 1 2 2 2 2 2 2 3 2 2 2 1 2 2 2 2 2 2 1 3 51