Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2083 ATGGGTCTTTCACTGCCCATGCAAACATGGTTCTACATTGGACTGTTGATAGTGGCCGCCACCGCTATCGATGAAGCCGACCGATTAGCCATCGCCTTGCCGGGATGCTCGAACCGGTGCGGTGATGTTGAGATTCCATACCCTTTTGGACTAACTACTGAATGCTCTCTCAACGAAGCATTTCTAGTAACTTGCAATGACTCATTTAGTCCCAACAAGCCATTCGTTGGCGACGTACCGATCATTAGTGTCTCGGTAGAAGATGGAGAATTGGTTATTGAAAATCTTGTGGCTAATTATTGTTTTGACGTCGATCAAAATGTCTCGGGACATAACGAAACGTTTTTCCAATTCGACGAGTTCAGCCTCTCGACGAAGAACATCTTCACCGTCATTGGTTGTAGTACTGTCGCGATGATCGGAGGCATCCTCCAAGATGATGAGAATTACCTATCGGGATGTGCGACGTTTTGCGATAGCCGTCGACATATGCCGAATGGATCGTGCTCCGGTGTCGGGTGTTGCCAGATGACAATTCCAAGTGGATTAAAAGAGATGAATTTGACAGTGAGTGGGAGCGACTTCACGAACGGGTCGGATATATTTTCGTGCGGGTATAGCTTCGTGGTGGAGCAAAATAAGTTCGAGTTCTCATCAACTTATGTTCCCCACTTCCCAAACGGCACAGTGCCCATCGTGCTGGATTGGTCCGTTGGCAACGAGTCGTGCACGGCGGTTGCGGGTAGCCAAGGGTTCATATGTCAGGGAAATAGCACCTGCATGAACCCTGGCTTCATGAATGGCTACCGGTGCAAGTGCTTGCAGGGATTCACTGGGAATCCATATTTTCCAAATGTTGGTTGCCAAGATATAAATGAATGTGAGGATCCAAACGAAAATAAGTGTACGGATATTTGTATAAATACGATTGGAGGGTATAAATGTGAATGCCCAAATGGATACTACGGCACTGCCACAAAGGACGGCAATGGCTGTGTTCGCCGCCGCCGGATTGATCATGTTCTCATTTTAATTTTTGGTATAGCCGTAGGCGTAATGGCGGTGCTAGTGAGTTCATCCTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCCTAAAACTCAAATCAAATTTCTTCCAACAAAACGGCGGATTCATGTTGGAACAGCAGCTCTCGATTCGAGATCAGACATCCAAGCCACAATCCGCAAGAATCTTCACGGCGGAGGAGTTACGGAAATCCACAAACAACTACTCCGACGACCGCATCGTCGGAATCGGCGGCTTCGGCACCGTCTACAAAGGCATCCTCCCAACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCTCCGACAAATCGCAGAACAAGCAGTTCATCAACGAAGTGGTCGTCCTCTCGCAGATCAACCACCGGAACGCAGTCAAACTCCTAGGCTGCTGTTTGGAAGAGGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAATGGCACGCTCTACGACCACATCCACAGCCGGAAATCGCAGATCTCTATTCCTTGGAAGATCCGCCTCAAAATCGCATCGGAAACCGCCGGCGTTCTCTCGTATCTTCACTCCTCCGCCGCGATTCCGATCATTCACCGAGACGTGAAGTCCACGAACATCCTACTGGACGAGAATTTCACCGCGAAGGTCTCCGATTTCGGCGCTTCGAAGTTAGTTCCCCTGGATCAGGCAGATCTGAACACGATCGTGCAAGGAACGCTCGGATACCTAGATCCGGAGTATTTACAGACGAGTCAATTGACGGAGAAGAGCGATGTGTACAGCTTCGGCGTTGTTCTTGTCGAATTGATGACCGGAAAAGTTCCTCTGTCGTTCAGCCGATCGGAGGAAGAGCGGAACCTGTCCATGTACTTTCTGATTGCTCTGAAACAGAATCGTCTGAGAGAGATTCTTGACAAGAATTTGGGCGGAGATCTGGATTTCGAGCAATTGAAGGAAGTTGCGAGGCTTGCGAAGCGGTGCTTGAGAGTGAAAGGAGAAGAACGGCCGACGATGAAGGAGGTCGCTGCAGAGCTTGAAGGATTGTTGCAAACGGCGTTTGGTCATCCATGGATTGCTGATGATAAATCTTCGTTGCTTGGAGTTGAAGAAACGGATCTGTTGGAAAATCAAGTTCGTGTTCATTCTGTTCTTCGTGTTCTTGATGATGATTTTGAATCTGTAACTGACTGTACGGATGGGTGCAATCGAGACGATAGTTTTCGCAATAACCAAATCATGCCAAAAGCTTATTCCGGGAGGTAA 2292 48.56 MGLSLPMQTWFYIGLLIVAATAIDEADRLAIALPGCSNRCGDVEIPYPFGLTTECSLNEAFLVTCNDSFSPNKPFVGDVPIISVSVEDGELVIENLVANYCFDVDQNVSGHNETFFQFDEFSLSTKNIFTVIGCSTVAMIGGILQDDENYLSGCATFCDSRRHMPNGSCSGVGCCQMTIPSGLKEMNLTVSGSDFTNGSDIFSCGYSFVVEQNKFEFSSTYVPHFPNGTVPIVLDWSVGNESCTAVAGSQGFICQGNSTCMNPGFMNGYRCKCLQGFTGNPYFPNVGCQDINECEDPNENKCTDICINTIGGYKCECPNGYYGTATKDGNGCVRRRRIDHVLILIFGIAVGVMAVLVSSSWFYIGFKRWKLLKLKSNFFQQNGGFMLEQQLSIRDQTSKPQSARIFTAEELRKSTNNYSDDRIVGIGGFGTVYKGILPTGAAVAIKKSKISDKSQNKQFINEVVVLSQINHRNAVKLLGCCLEEEVPLLVYEFVSNGTLYDHIHSRKSQISIPWKIRLKIASETAGVLSYLHSSAAIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQADLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLIALKQNRLREILDKNLGGDLDFEQLKEVARLAKRCLRVKGEERPTMKEVAAELEGLLQTAFGHPWIADDKSSLLGVEETDLLENQVRVHSVLRVLDDDFESVTDCTDGCNRDDSFRNNQIMPKAYSGR 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37283960 37288454 - Sed0015492.1 Sed10g2083 728587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2083 763 SUPERFAMILY Protein kinase-like (PK-like) 401 691 IPR011009 -
Sed10g2083 763 Gene3D Phosphorylase Kinase; domain 1 384 493 - -
Sed10g2083 763 CDD STKc_IRAK 424 691 - -
Sed10g2083 763 Gene3D Laminin 252 292 - -
Sed10g2083 763 Gene3D Transferase(Phosphotransferase) domain 1 494 698 - -
Sed10g2083 763 Gene3D Laminin 293 334 - -
Sed10g2083 763 ProSiteProfiles EGF-like domain profile. 239 289 IPR000742 -
Sed10g2083 763 SMART egfca_6 243 289 IPR001881 GO:0005509(InterPro)
Sed10g2083 763 SMART egfca_6 290 333 IPR001881 GO:0005509(InterPro)
Sed10g2083 763 CDD EGF_CA 290 324 - -
Sed10g2083 763 Pfam EGF-like domain 254 280 IPR000742 -
Sed10g2083 763 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 692 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed10g2083 763 FunFam Wall-associated receptor kinase 2 494 708 - -
Sed10g2083 763 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Sed10g2083 763 FunFam Fibrillin 2 285 328 - -
Sed10g2083 763 ProSitePatterns Calcium-binding EGF-like domain signature. 290 315 IPR018097 GO:0005509(InterPro)
Sed10g2083 763 FunFam Wall-associated receptor kinase 2 386 493 - -
Sed10g2083 763 ProSiteProfiles EGF-like domain profile. 290 327 IPR000742 -
Sed10g2083 763 SUPERFAMILY EGF/Laminin 289 325 - -
Sed10g2083 763 ProSiteProfiles Protein kinase domain profile. 418 701 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g2083 763 Pfam Protein kinase domain 418 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g2083 763 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Sed10g2083 763 SMART serkin_6 418 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g2083 763 SMART egf_5 293 333 IPR000742 -
Sed10g2083 763 SMART egf_5 242 289 IPR000742 -
Sed10g2083 763 Pfam Wall-associated receptor kinase galacturonan-binding 36 86 IPR025287 GO:0030247(InterPro)
Sed10g2083 763 CDD EGF_CA 249 279 - -
Sed10g2083 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g2083 763 Pfam Calcium-binding EGF domain 290 332 IPR049883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0940 Sed-Chr1:6879504 Sed10g2083 Sed-Chr10:37283960 2.30E-198 dispersed
Sed01g0942 Sed-Chr1:6929149 Sed10g2083 Sed-Chr10:37283960 2.50E-185 dispersed
Sed10g2083 Sed-Chr10:37283960 Sed12g0658 Sed-Chr12:3913349 4.50E-97 dispersed
Sed10g2083 Sed-Chr10:37283960 Sed02g0586 Sed-Chr2:43527057 9.20E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79873 PF00069 Pkinase 2.40E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2083 - - - 0.0