Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2090 ATGGTGCCTTCCGGGCCATCTACTCCCATTGGCGGTGCACAGTCTGTTTCACCATCGCTTTTGAGAACGAATTCTGGAATGATGGGAGCACAAGGAGGGATGTCTTCTCAGTCAGCTTATCCTTCTCTTGTATCTCCACGAACTCAGTTTAGTAGTATGAATATGCTTGGTAATACGCCCGGTATGTCTTCTTTCCTGAATCAGTCATATGGGAATGGAGTTCCGAATTCTGGGCCGTCAGGTCTTGGAAACAGCCAACGGGGAGGTATGGACCCTGGTTCTGAGTCAGATCCATTTTCACTTGTTGGCAATGGTTTTTCCTTTAACAATACCCCATCATCCATGGTGGCATCGAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCCGGGCCACAATTTTCAAACCATTGTAGCAGCCAAATAGTACCTAATCAACAGCAGCCACAACAAGTTGATCCCCAGAACTTCCAACATAGCCAGAATTCAATGCAACAGTTCACTTCCTCTAATAATAACTCACAGCAACAACAACAGCATCAATTCCAACCTATTCGTGGAAGCTTATGTGGTGTTGGACCTGTCAAGTTAGAGCATCAAATGAGTAACAATGATCTTCAAGGGCAGCAACTACAGCAGCAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACTTGGGTCCGGTGAAATTGGAAACTCAACATTCTGATCAGTCATTGTTTCTACAGCAACAGCAGCATCAACAGCAACAGCAGCATCAACAGCAACAGCAGCAACAACAACAGCAACAACAACAGTTACTCAGTATGTCCAGGCAGTCGTCTCAGGTTGCTGCAGCACATATGAATCTTTTGCAACAGCAAAGAGTCTTGCAATTTCAACACCAACAGCAACTTCTAAAGGCTATTCCTCAGCAAAGACCACATTTGACTCAACAATTTCAGCAACAAAATTTGCCATTTAGATCCCCCGTAAAACCAGTTTATGAACCTGGCATGTGTGCTCGACGCTTGACAAATTATATGTGCGAACAACAGAAGAGGCCTGCAGACAACAATATTGAGTTCTGGAGGAATTTTGTTGCAGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGTAAGCCTGGCCGAGGTTTTGAAGCAACTTTTGAAGTTCTTCCAAGGCTGTTCAAAATCAAGTATGAAAGTGGGACTCTTGAAGAGCTTCTCTATATTGATATGCCCCGTGAATATCCTAATTCCTCAGGACAAATTGTCCTAGATTATGCAAAAGCAATACAAGAAAGCATTTTTGAGCAACTTCGTGTTGTTCGTGTTGGCCAACTTCGGATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTACTAATACCTCAGGTTAGTCAGCTGGGGGCAGCCGCTCAAAAGTATCAGACTGCTATTCAAAATGCATCATCAAACTTGTCTACTCCAGAGTTGCAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATATGTCCGGTGCCTTCAGATTTCAGAAGTTGTCAATAGTATGAAGGACTTGATAGATTACAGCCGAGAAACTTCGACTGGACCTATTGAGAGCTTAGCCAAGTTTCCACGGAAGACAAATGCTTCACCAGGATTCCACAGCCAAGCTCAAAACGCCGAGCAACAATTAACTCAGCCTCAGCCCCAGCTCCAGCCACAAACAATCAATCAAACCCCTAATGGCGACCAAACCTCGGTTCCGGCTATGCAGCTTGCTGCTAACAATGGTGTTCCGAATGCAAATAACTCCGCTAATCCAGCATCAACATCAACTTCTGCTAGTACCATTGTTGGGTTACTGCACCAAAATTCCATGAACTCTAGACAACAGAACTCTATCAGCAATGCCGGTAGCCCTTACGCTGGTAATTCTGTGCAAATATCGTCGCCAGGTTCCTCCACCACGATTGCTCAGGCACAGGCGAACAACCCCTCCTTCCAATCGCCTACATTGTCCTCACCTAACAATCCCCTACAATCATCACTTAGTACTGCTACAACTACTAATCACATGAGTGCCACAAACTCTCCGGTAAATGTTACCTTGCAACAGCCAACACAACACTCTTCCGAAGCCGATCAAAGCGATTCACAGAGCTCAGTGCAAAAGATTATTCAGGAATACATGATGTCGAACCAACTAAACGGGATGAACACAATGACTGGTGCTTCCTCTCTAGCAGAGGATGTGAAATCTGTTAACGGGATGTTGCCAGCAAACAACATTATGAGTCTCAATGGACGGAATGGCCTCGTTGGGAGTGGAACTGCTCATAGTGTTGCTGGTATCAGGAGTGTGGGATATGGCTCGATGGGCGGGGGACTTGCTCAGGCTTCGATGGTCAATGGGATGAAGTCTGCAATGGGAAACAACTCGATTTCAAACGGGAGAATCGGGTTGGCGTCATTGGCTCGAGAACAGAGCATAAATCATCCAGATTTGGGGGACCAGCTCCTTAATGGTCTTGGAGCAGTGAATGGGTTCAACAATCTTCAATTTGATTATTGA 2769 44.75 MVPSGPSTPIGGAQSVSPSLLRTNSGMMGAQGGMSSQSAYPSLVSPRTQFSSMNMLGNTPGMSSFLNQSYGNGVPNSGPSGLGNSQRGGMDPGSESDPFSLVGNGFSFNNTPSSMVASNTANPGSSSQVSGPQFSNHCSSQIVPNQQQPQQVDPQNFQHSQNSMQQFTSSNNNSQQQQQHQFQPIRGSLCGVGPVKLEHQMSNNDLQGQQLQQQQQQQLQSMRNLGPVKLEPQQLQSMRNLGPVKLETQHSDQSLFLQQQQHQQQQQHQQQQQQQQQQQQQLLSMSRQSSQVAAAHMNLLQQQRVLQFQHQQQLLKAIPQQRPHLTQQFQQQNLPFRSPVKPVYEPGMCARRLTNYMCEQQKRPADNNIEFWRNFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYIDMPREYPNSSGQIVLDYAKAIQESIFEQLRVVRVGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETSTGPIESLAKFPRKTNASPGFHSQAQNAEQQLTQPQPQLQPQTINQTPNGDQTSVPAMQLAANNGVPNANNSANPASTSTSASTIVGLLHQNSMNSRQQNSISNAGSPYAGNSVQISSPGSSTTIAQAQANNPSFQSPTLSSPNNPLQSSLSTATTTNHMSATNSPVNVTLQQPTQHSSEADQSDSQSSVQKIIQEYMMSNQLNGMNTMTGASSLAEDVKSVNGMLPANNIMSLNGRNGLVGSGTAHSVAGIRSVGYGSMGGGLAQASMVNGMKSAMGNNSISNGRIGLASLAREQSINHPDLGDQLLNGLGAVNGFNNLQFDY 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37332533 37342832 + Sed0021141.1 Sed10g2090 728594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2090 922 Pfam LIM-domain binding protein 352 606 IPR029005 -
Sed10g2090 922 MobiDBLite consensus disorder prediction 692 763 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 64 91 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 8 42 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 64 182 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 247 272 - -
Sed10g2090 922 Coils Coil 261 288 - -
Sed10g2090 922 PANTHER LIM DOMAIN-BINDING PROTEIN 228 918 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Sed10g2090 922 MobiDBLite consensus disorder prediction 1 42 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 100 182 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 615 653 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 660 679 - -
Sed10g2090 922 MobiDBLite consensus disorder prediction 611 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2872 Sed-Chr7:43447024 Sed10g2090 Sed-Chr10:37332533 0.00E+00 dispersed
Sed10g2090 Sed-Chr10:37332533 Sed11g1320 Sed-Chr11:28958595 5.50E-283 dispersed
Sed01g3626 Sed-Chr1:65486910 Sed10g2090 Sed-Chr10:37332533 2.00E-93 transposed
Sed13g0163 Sed-Chr13:1039241 Sed10g2090 Sed-Chr10:37332533 1.20E-93 transposed
Sed10g2090 Sed-Chr10:37332533 Sed07g2871 Sed-Chr7:43447024 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2090 - - - 0.0