Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2099 ATGTCGTTTCGTAGTATAGTTCGTGATGTTAGAGACGGGTTTGGAAGTTTATCCAGGCGTAGTTTCGAGCTGAGATTGTCTGGTCACCAACGAGGTAAATCTCATGGATCAGTTCATGATCTGCATGACCAACCTCTGATAATTCAGACAAGTCGTTGGGCTAACCTCCCTCCTGAGCTATTGCGGGACGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTTTGGCCAGCTCGAAGGCATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTGAAAAGTCCTGAGTTCTCGGGGAAAATTACCTTCCCTGTATCCTTAAAGCAGCCAGGAACTCGCGATGAAATGATTCAATGCTTCATTAGGAGGGATAAATCTGATTTGACTTACCACCTTTACCTTAGCCTTAGTCCTGCTTTACTCGTTGACAATGGGAAATTTCTTCTTTCTGCAAAAAGAACAAGGAGAACGACTTGCACCGAGTATGTAATCTCCATGGATGCAGATAATATATCGAGATCGAGCAACACCTACATTGGAAAACTAAGGTCAAATTTCCTAGGGACCAAGTTCATTATCTATGATACGCAACCTCCATACAATAACGCCCATATTTCCCCACCAGGCCGTAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTTCCAACTGGTAGCTTTGACATTGCTCAAGTCTCCTATGAGCTGAATGTTCTTGGCACAAGAGGCCCGAGAAAGATGCAGTGCACATTGCACTCCATCCCCGCTTCATCTCTTGAACCTGGTGGCACTGTTCCAGGCCAGCCTCAAGTCATCACTCGACTGCTTGGGGATTCGTTTCGAAGTATGTCATTCTCGAAGTCTATCTTCAATTCTACCGATTTCAGTAGCTCCCGCTTCTCCGATATCGGTTGTTCACGTGATCAAGATGAAGTGGGAAAGGAGAGACCATTGATTCTTCGGAACAAGCCACCACGGTGGCACGAGCAGCTGCAGTGTTGGTGTCTTAATTTCAGGGGACGAGTAACCGTAGCCTCTGTAAAAAACTTTCAATTGATAGCTGCAACAGAGCCTTCTTCCTCAGCTACAAACCAACCACAGCCAAACCAACGCACCCAATCTGACCACGACAAAGTCATTCTCCAATTCGGGAAGGTCAGCAAGGACATGTTTACGATGGATTACCGATATCCATTGTCGGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTCGACACCAAATTGGCCTGTGAATAA 1284 45.72 MSFRSIVRDVRDGFGSLSRRSFELRLSGHQRGKSHGSVHDLHDQPLIIQTSRWANLPPELLRDVVMRLEESESVWPARRHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDEMIQCFIRRDKSDLTYHLYLSLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAHISPPGRSRRFYSKKVSPKVPTGSFDIAQVSYELNVLGTRGPRKMQCTLHSIPASSLEPGGTVPGQPQVITRLLGDSFRSMSFSKSIFNSTDFSSSRFSDIGCSRDQDEVGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSSATNQPQPNQRTQSDHDKVILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37439486 37444487 - Sed0024084.2 Sed10g2099 728603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2099 427 CDD F-box_AtTLP-like 53 97 - -
Sed10g2099 427 MobiDBLite consensus disorder prediction 365 384 - -
Sed10g2099 427 FunFam Tubby-like F-box protein 110 427 - -
Sed10g2099 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Sed10g2099 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Sed10g2099 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Sed10g2099 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Sed10g2099 427 Pfam Tub family 114 422 IPR000007 -
Sed10g2099 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Sed10g2099 427 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Sed10g2099 427 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Sed10g2099 427 PANTHER TUBBY-RELATED 42 426 - -
Sed10g2099 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515(InterPro)
Sed10g2099 427 FunFam Tubby-like F-box protein 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2099 Sed-Chr10:37439486 Sed11g1353 Sed-Chr11:29602629 2.60E-195 dispersed
Sed10g2098 Sed-Chr10:37439486 Sed10g2099 Sed-Chr10:37439486 9.80E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39861 PF01167 Tub 4.00E-117 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2099 K19600 - csv:101206041 782.711