Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2101 ATGGATGTCGACTCCGACGTGGCGGTGGCACCGGCGACCGAAGCCGTAGAGCCCCACGAAGCTGGCGTCGCTCGGTCGAACTCGGGTGAAGAAGATAAAGGGTTGTTGTTATTCGAAGTTGGAGAGAAGAATTTTGGTGGAAACCGGTGGCCTCGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCCGATATGGATATGGTTTTTAGAGATGCCACTCATAAAGCTCCATTGTGGGAAGAAGTTTCAAGGAAATTGGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGTAGAGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGGTCGAAATGGGAAATCCGATAATAGCAAGAAAGGTTATAAATTTTCTGATGAATTAGAGGCTCTTGATCATATTCATCATCACAATCACATTTCATTTCAATCTACCCACCACCACCCTCCGTCGTTGTCGTTGCAGCTGCCGCTCCCGCCTATCCCTCGGCCGATGACGCCGCCACCGTTCTCGAAAATAATCAATCCTACTGTTCCATTGAACATGAACACAACGAGCACCAGTTCTTTACCACCCAAATCATCTAACCCTCTTTCCAATGTGCCAAACATGGCTGGTGTCAACGGGATGTTTTCGAGCTCGACATCATCGTCGACAGCGTCGGAGGAGGATCCGTTTAGGAGGAAGAGGAGAAAAAAGAGGAAGTGGAGTGATTTTTTTGTGAGATTGACAAAGGAAGTGATAGAGAAGCAAGAGAGGCTCCAACTAAAGTTTTTGGAAACCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGAGGAAGCATGGAGAATGAAAGAGATGTCAAGGGTAAATCAAGAACATGAAATTTTAGTCCAAGAGATGACCAAGGCGGCCGCGAAAGACGCCGCAGTCGTCGCAATTTTGCAAAAAATCGCTCCCCCATCTCCATCTACATCTCTGTCTCCATCGCCAAATTCGCCACTACTGCAACCGCCACCGCCACCGCCGCACAAAGGCGAGAATAACGGAGAGACAACCACCGTTATTGCAACACATCTTTCAATGGAGGCTCAGAACAGCGAGAACAATAGAAAGGTGACCACGACTATAGAAAGCCCTTCGAGATGGCCAAAAGCCGAAATCGAAGCATTGATAAGGCTAAGGACAGACATGGAAATGAAGTATCAAGAGAATGGGGCAAAAGGGTTATTATGGGAAGAGATATCATCAGCCATGAGAGGGATTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTACCACCAATTGGATGCTCTATACAAAGAGAAAGAGAAAAACATGAGTTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCTCCATTGATGGGAAATTTGCAAAGAATAAATGGAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTTGAAGATTGA 1566 44.38 MDVDSDVAVAPATEAVEPHEAGVARSNSGEEDKGLLLFEVGEKNFGGNRWPRQETLALLKIRSDMDMVFRDATHKAPLWEEVSRKLGELGFNRTPKKCREKFENVYKYHKRTKGRNGKSDNSKKGYKFSDELEALDHIHHHNHISFQSTHHHPPSLSLQLPLPPIPRPMTPPPFSKIINPTVPLNMNTTSTSSLPPKSSNPLSNVPNMAGVNGMFSSSTSSSTASEEDPFRRKRRKKRKWSDFFVRLTKEVIEKQERLQLKFLETLERIENQRKLREEAWRMKEMSRVNQEHEILVQEMTKAAAKDAAVVAILQKIAPPSPSTSLSPSPNSPLLQPPPPPPHKGENNGETTTVIATHLSMEAQNSENNRKVTTTIESPSRWPKAEIEALIRLRTDMEMKYQENGAKGLLWEEISSAMRGIGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYYHQLDALYKEKEKNMSFDINSQMEPLMVEPEQQWPPPPLMGNLQRINGEEEDGGSSSTDVED 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37483322 37485624 - Sed0009820.1 Sed10g2101 728605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2101 521 MobiDBLite consensus disorder prediction 322 344 - -
Sed10g2101 521 MobiDBLite consensus disorder prediction 319 349 - -
Sed10g2101 521 FunFam Trihelix transcription factor GT-2 50 111 - -
Sed10g2101 521 Pfam Myb/SANT-like DNA-binding domain 379 466 IPR044822 -
Sed10g2101 521 Pfam Myb/SANT-like DNA-binding domain 48 133 IPR044822 -
Sed10g2101 521 SMART sant 46 108 IPR001005 -
Sed10g2101 521 SMART sant 377 439 IPR001005 -
Sed10g2101 521 MobiDBLite consensus disorder prediction 213 235 - -
Sed10g2101 521 CDD GT1 48 113 - -
Sed10g2101 521 PANTHER FI21293P1 26 474 - -
Sed10g2101 521 MobiDBLite consensus disorder prediction 1 29 - -
Sed10g2101 521 ProSiteProfiles Myb-like domain profile. 42 106 IPR001005 -
Sed10g2101 521 FunFam Trihelix transcription factor GT-2 381 442 - -
Sed10g2101 521 ProSiteProfiles Myb-like domain profile. 379 437 IPR001005 -
Sed10g2101 521 Gene3D - 50 111 - -
Sed10g2101 521 Gene3D - 381 442 - -
Sed10g2101 521 Coils Coil 252 272 - -
Sed10g2101 521 MobiDBLite consensus disorder prediction 488 521 - -
Sed10g2101 521 CDD GT1 379 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3843 Sed-Chr5:46067501 Sed10g2101 Sed-Chr10:37483322 1.00E-78 dispersed
Sed07g2865 Sed-Chr7:43392232 Sed10g2101 Sed-Chr10:37483322 1.20E-89 dispersed
Sed07g2866 Sed-Chr7:43410313 Sed10g2101 Sed-Chr10:37483322 6.20E-150 dispersed
Sed10g2101 Sed-Chr10:37483322 Sed10g2104 Sed-Chr10:37530060 2.20E-252 proximal
Sed10g2100 Sed-Chr10:37458956 Sed10g2101 Sed-Chr10:37483322 3.70E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39863 PF13837 Myb_DNA-bind_4 8.40E-22 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2101 - - - 0.0