Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2104 ATGGATGTCGACTCCGACGTGGCGGTGGCACCGGCGACCGAAGCCGTAGAGCCCCACGGCTGGCGCGCTCGGTCGAACTCGGGTGAAGAAGATAAAGGGTTGTTGTTATTCGAAGTTGGAGAGAAGAATTTTGGTGGAAACCGGTGGCCTCGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCCGATATGGATATGGTTTTTAGAGATGCCACTCATAAAGCTCCATTGTGGGAAGAAGTTTCAAGGAAATTGGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGTAGAGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGGTCGAAATGGGAAATCCGATAATAGCAAGAAAGGTTATAAATTTTCTGATGAATTAGAGGCTCTTGATCATATTCATCATCACAATCACATTTCATTTCATTTCAATCTACCCACCACCACCCTCCGTCGTTGTCGCAGCAGCTGCCGCTCCGCCTATCCTCGGCCGATGACGCCGCCACCGTTCTCGAAAATAATCAATCCTACTGTTCCATTGAACATGAACACAACGAGCACCAGTTCTTTACCACCCAAATCATCTAACCCTCTTTCCAATGTGCCAAACATGGCTGGTGTCAACGGGATGTTTTCGAGCTCGACATCATCGTCGACAGCGTCGGAGGAGGATCCGTTTAGGAGGAAGAGGAGAAAAAAGAGGAAGTGGAGTGATTTTTTTGTGAGATTGACAAAGGAAGTGATAGAGAAGCAAGAGAGGCTCCAACTAAAGTTTTTGGAAACCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGAGGAAGCATGGAGAATGAAAGAGATGTCAAGGGTAAATCAAGAACATGAAATTTTAGTCCAAGAGATGACCAAGGCGGCCGCGAAAGACGCCGCAGTCGTCGCAATTTTGCAAAAAATCGCTCCCCCATCTCCATCTACATCTCTGTCTCCATCGCCAAATTCGCCACTACTGCAACCGCCACCGCCACCGCCGCACAAAGGCGAGAATAACGGAGAGACAACCACCGTTATTGCAACACATCTTTCAATGGAGGCTCAGAACGGCGAGAACAATAGAAAGGTGACCACGACTATAGAAAGCCCTTCGAGATGGCCAAAAGCCGAAATCGAAGCATTGATAAGGCTAAGGACAGACATGGAAATGAAGTATCAAGAGAATGGGGCAAAAGGGTTATTATGGGAAGAGATATCATCAGCCATGAGAGGGATTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTACCACCAATTGGATGCTCTATACAAAGAGAAAGAGAAAAACATGAGTTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCTCCATTGATGGGAAATTTGCAAAGAATAAATGGAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTTGAAGATTGA 1566 44.44 MDVDSDVAVAPATEAVEPHGWRARSNSGEEDKGLLLFEVGEKNFGGNRWPRQETLALLKIRSDMDMVFRDATHKAPLWEEVSRKLGELGFNRTPKKCREKFENVYKYHKRTKGRNGKSDNSKKGYKFSDELEALDHIHHHNHISFHFNLPTTTLRRCRSSCRSAYPRPMTPPPFSKIINPTVPLNMNTTSTSSLPPKSSNPLSNVPNMAGVNGMFSSSTSSSTASEEDPFRRKRRKKRKWSDFFVRLTKEVIEKQERLQLKFLETLERIENQRKLREEAWRMKEMSRVNQEHEILVQEMTKAAAKDAAVVAILQKIAPPSPSTSLSPSPNSPLLQPPPPPPHKGENNGETTTVIATHLSMEAQNGENNRKVTTTIESPSRWPKAEIEALIRLRTDMEMKYQENGAKGLLWEEISSAMRGIGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYYHQLDALYKEKEKNMSFDINSQMEPLMVEPEQQWPPPPLMGNLQRINGEEEDGGSSSTDVED 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37530060 37532476 - Sed0006791.1 Sed10g2104 728608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2104 521 MobiDBLite consensus disorder prediction 322 344 - -
Sed10g2104 521 MobiDBLite consensus disorder prediction 319 349 - -
Sed10g2104 521 SMART sant 377 439 IPR001005 -
Sed10g2104 521 SMART sant 45 107 IPR001005 -
Sed10g2104 521 Pfam Myb/SANT-like DNA-binding domain 47 132 IPR044822 -
Sed10g2104 521 Pfam Myb/SANT-like DNA-binding domain 379 466 IPR044822 -
Sed10g2104 521 PANTHER FI21293P1 33 474 - -
Sed10g2104 521 CDD GT1 47 112 - -
Sed10g2104 521 ProSiteProfiles Myb-like domain profile. 41 105 IPR001005 -
Sed10g2104 521 Gene3D - 49 110 - -
Sed10g2104 521 Gene3D - 381 442 - -
Sed10g2104 521 FunFam Trihelix transcription factor GT-2 381 442 - -
Sed10g2104 521 ProSiteProfiles Myb-like domain profile. 379 437 IPR001005 -
Sed10g2104 521 MobiDBLite consensus disorder prediction 1 27 - -
Sed10g2104 521 FunFam Trihelix transcription factor GT-2 49 110 - -
Sed10g2104 521 Coils Coil 252 272 - -
Sed10g2104 521 MobiDBLite consensus disorder prediction 488 521 - -
Sed10g2104 521 CDD GT1 379 444 - -
Sed10g2104 521 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2100 Sed-Chr10:37458956 Sed10g2104 Sed-Chr10:37530060 1.40E-93 dispersed
Sed10g2101 Sed-Chr10:37483322 Sed10g2104 Sed-Chr10:37530060 2.20E-252 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39864 PF13837 Myb_DNA-bind_4 8.40E-22 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2104 - - - 0.0