Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2107 ATGGCACGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCTGGTGGGAAGTTGAAGAAAAAAACATACGCAGTAGACGCTATGGACTTCTCCGTTGGAACCGAGGTGCAGGAGGAGAAAGAGGAGAAGAGCGGTTCAAAAGCTTCACATGATGATGATGGGAATGGTGTTCCAATCATCGGAAAGAAGGGTAAGACGAAGAAAGGTGGAAATAACAGTGCATTTATTAGTACGTCGAGTTTTTGTTTGCTCGAGGACGAGGAGGGAGAGGATGGTGCTGATAATGATGATGATGACGACGACAAGGAGGAAGGGGATGATTCTGAAATCAAGTTTTCGATTAAGAAGAAGTCGTCGAAGTCTTCCAAGAAGAGTGATTTTTGTGGAGTGTCAACATTCAATGCCCTTGATGTCGAGAAAGATGAAGATAGAACTGACAATGAGATCAAAGTTGAAGAAGGGATTGGCGATGAGCTTGTTTTTTCATTTACAGGCAAGAAGAAGTCATCAAAAGGTGATAGGAAGGGTGGGAATGCATATTCAGGTTTTAGTGGTCTTGATCATGATGATAAGGATGAGGATGAAAATGTTACAACTATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGTTAAGGGTTCAAAGAAAAGTGGAAATTCGTATACTGCAGCGTTGGCCGATGAGGATGACGAGCCAAATAAATTAGACAATGATGGTGTTGATGACAATGTTACTCCATTACGTGGTGAAAAGGCGTTTGGCAATGAAGATAGAGATGTTGTATTACCTGAAATACTCAGTACAGCAAGTAGCACTTTTAATTCTGATTTATCTAAGGCAAACAAGCTGGATGGGGTGGCACAAACTTCAAGAAATAAAAAGAAGAAGAAGAAGCAGAACAAGGGAAGGACTGCTCAAGAAGAAGATGATCTGGATAAGCTTTTTGCTGGCCTAGGAGTGGAGCCTGCTATATCAAAGCCAATAGAGCCTCCTCTTTCTTCACAAGTGGCCAAAGTTGAGAACCCACCTAAGCTTGTAGTTGTAGCTCCTCCTGAAGAAGAGAGCACGGAATCGGCTGCAACAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGAGAAAAAGGCTGCAGCCGCAGCGACAACGCCTGCTGAAGGGAATGATGATAAAATTGGAGAAGTGATGACCCAAATTGTAGAACCCAAAAAAGGTGCTACAAAGAGTAAAGTGGCAGAGAAGAAAGTGCCAAAGCATGTCAGGGAGATGCAAGAGGCAATGGCTAGGAGGAAAGAAGAAGAAGAGAGATGGAAAAGGGAAGAAGAAGAGAGACTGAGAAAGGAAGAAGAAGAGAGGCGTAAGCGAGAAGAACTTGAAAGGCAAGCGGAGGAGGCTAGGCGCAGGAAGAAGGAAAGAGAAAAAGAGAAACTTCTAAAGAAGAAACAGGAAGGCAAGCTGCTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAACTGCGGGGGGCTTACCTTTTGCTACATCTGATCCCAGTGCGCCAGCCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACAAATGGTAATGCACAAACGAAGGTAGTGGAACATATAGAAGAAATAATACAAGAAAAAGATGTGGTAGAGACTGCAATATTGGAGTCTGATAAGAACAAACCTGTTGAGTCAATGCACGTGGAGGAAAAATTAGATGTTATTGAGGCTACTGAGGATAATGAAACTCAAGAAGGTGAGGACGAGGACGAGGACGAGTGGGATGCAGAGAGTTGGGATGATGCTGTTGTTAATCTTTCCTTAAGTTCTATTGCTTATGAGGAGCTTGATCAAGCAGAAACTGAGAATGGCATGAAGAAAGTGAGAAAGAGTGATGCATCAACTTCATGTGCCGAGTCAAATGCCGCTGCCCAGAAAAGTTTACCTTCTCAGTCTACTCTAGATGTTGAAAACAAAAAGAAGCAGCCTGAGATTGAGCTTGTTAAGAAAAAAACTTCAACTTCAGATGCTACTCAACTGGTAGAAAATCTTCGGTCACCAATTTGTTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGCGAGGCAGGAGGAATCACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAAAACATTCGCGAAAGAACGAGAGAATTGAAAGCTGATGCAAAGTTGAGAGTTCCAGGCCTACTTGTTATTGATACCCCTGGCCACGAATCATTTACGAACTTACGTTCTCGCGGTTCGGGTTTAAGCGATCTTGCAATTTTGGTTGTGGATATCATGCATGGCTTAGAGCCACAAACAATAGAATCCCTTAATCTCTTGAGGATGAGAAACACAGAATTTATCATTGCTTTGAATAAGGTTGACAGACTTTTTGGGTGGAAAACAATCCGTAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATCAGTTCAATACGAAGCTTATTCGGATTATCACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGGATTCCAGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGGAGAAACTTACATATAGTGATGATGTGCAGTGTACCGTTTTAGAGGTCAAGGTTGTTGAAGGGCATGGAACGACTATTGATGTCATATTGGTTAATGGCGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTGTTCGAGCCCTACTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACTTATCTGCACCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATATCTGGACAGGGTCTTGAGCATGCCATTGCTGGAGCCAGTGTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATGAAGAATTCAGCAATGGACGATATGAAGTCGGTCTTGAGCGGGATAGACAAAACTGGAGAGGGAGTCTGTGTTCAAGCATCCACACTTGGATCCTTGGAAGCATTGTTGGAGTTTCTGAAGTCCCCGGCAGTTAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAGAGATGTCATGAAAGCAAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACCCAAGACGCTCGACAACTTTCGGATGAGCTCGGAGTGAACATTTTTAATGCCGATATCATTTATCACTTGTTCGACCGATTCAAGGCCTATATCGATAACCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAGGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTTTGTTAGGGGTGGAGGTAATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTGCAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAATTAATCACAAACCTGTTGAGTCTGCAAAGAAAGGGCAGAAGATTTCCATTAAGATTGCAGGGCACTCTTCAGAGGAGCAGCAAAAGATGTATGGCAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATTTCTAGGAAGTCAATTGATCTACTCAAAGCCAATTATCGGGATGATTTGTCCAAGGAGGAGTGGAATTTGGTGAAGAAATTGAAGAAGTTTTTCAAGATACAATGA 3864 42.42 MARKKPTARDDDSAPGGKLKKKTYAVDAMDFSVGTEVQEEKEEKSGSKASHDDDGNGVPIIGKKGKTKKGGNNSAFISTSSFCLLEDEEGEDGADNDDDDDDKEEGDDSEIKFSIKKKSSKSSKKSDFCGVSTFNALDVEKDEDRTDNEIKVEEGIGDELVFSFTGKKKSSKGDRKGGNAYSGFSGLDHDDKDEDENVTTISFSGKKKKSVKGSKKSGNSYTAALADEDDEPNKLDNDGVDDNVTPLRGEKAFGNEDRDVVLPEILSTASSTFNSDLSKANKLDGVAQTSRNKKKKKKQNKGRTAQEEDDLDKLFAGLGVEPAISKPIEPPLSSQVAKVENPPKLVVVAPPEEESTESAATRKKKKKKEKEKEKKAAAAATTPAEGNDDKIGEVMTQIVEPKKGATKSKVAEKKVPKHVREMQEAMARRKEEEERWKREEEERLRKEEEERRKREELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILATAGGLPFATSDPSAPAKRPKYQTKKSKPAHHQTNGNAQTKVVEHIEEIIQEKDVVETAILESDKNKPVESMHVEEKLDVIEATEDNETQEGEDEDEDEWDAESWDDAVVNLSLSSIAYEELDQAETENGMKKVRKSDASTSCAESNAAAQKSLPSQSTLDVENKKKQPEIELVKKKTSTSDATQLVENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLRVPGLLVIDTPGHESFTNLRSRGSGLSDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLFGWKTIRNAPILKTMKQQSKDVQNQFNTKLIRIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTEKLTYSDDVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTVRALLTPHPMKELRVKGTYLHHKEIKAAQGIKISGQGLEHAIAGASVHVVGPEDDLEDMKNSAMDDMKSVLSGIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKRDVMKASVMLEKKKEYATILAFDVKVTQDARQLSDELGVNIFNADIIYHLFDRFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPILLGVEVIEGIAKVGTPICIPAREFIDIGRIASIEINHKPVESAKKGQKISIKIAGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSKEEWNLVKKLKKFFKIQ 1287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37565286 37572477 + Sed0008881.1 Sed10g2107 728611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2107 1287 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1020 1149 IPR036925 -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 301 315 - -
Sed10g2107 1287 CDD IF2_eIF5B 698 908 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 630 671 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 265 287 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 108 124 - -
Sed10g2107 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 986 IPR027417 -
Sed10g2107 1287 FunFam eukaryotic translation initiation factor 5B 918 1037 - -
Sed10g2107 1287 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 695 911 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 Pfam Elongation factor Tu domain 4 1157 1230 IPR029459 -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 1 128 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 34 51 - -
Sed10g2107 1287 Pfam Elongation factor Tu GTP binding domain 698 907 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 NCBIfam small GTP-binding protein domain 700 854 IPR005225 GO:0005525(InterPro)
Sed10g2107 1287 PRINTS GTP-binding elongation factor signature 763 773 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 PRINTS GTP-binding elongation factor signature 815 824 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 PRINTS GTP-binding elongation factor signature 699 712 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 PRINTS GTP-binding elongation factor signature 779 790 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g2107 1287 MobiDBLite consensus disorder prediction 85 107 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 590 607 - -
Sed10g2107 1287 FunFam Eukaryotic translation initiation factor 5B 689 917 - -
Sed10g2107 1287 Gene3D - 1038 1143 IPR036925 -
Sed10g2107 1287 Pfam Translation-initiation factor 2 1021 1136 IPR023115 -
Sed10g2107 1287 Coils Coil 360 380 - -
Sed10g2107 1287 CDD aeIF5B_II 920 1029 - -
Sed10g2107 1287 Gene3D Translation factors 918 1037 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 630 644 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 166 496 - -
Sed10g2107 1287 FunFam Eukaryotic translation initiation factor 5B 1150 1287 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 568 607 - -
Sed10g2107 1287 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 354 1285 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Sed10g2107 1287 Gene3D Translation factors 1150 1287 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 237 258 - -
Sed10g2107 1287 Coils Coil 415 481 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 405 496 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 568 589 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 186 202 - -
Sed10g2107 1287 SUPERFAMILY Translation proteins 1154 1286 IPR009000 -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 645 667 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 1 18 - -
Sed10g2107 1287 MobiDBLite consensus disorder prediction 509 545 - -
Sed10g2107 1287 CDD IF2_aeIF5B_IV 1158 1253 - -
Sed10g2107 1287 FunFam Eukaryotic translation initiation factor 5B 1037 1143 - -
Sed10g2107 1287 Gene3D - 690 917 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0612 Sed-Chr10:4045105 Sed10g2107 Sed-Chr10:37565286 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2107 K03243 - csv:101204360 1325.84