Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g2107 | ATGGCACGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCTGGTGGGAAGTTGAAGAAAAAAACATACGCAGTAGACGCTATGGACTTCTCCGTTGGAACCGAGGTGCAGGAGGAGAAAGAGGAGAAGAGCGGTTCAAAAGCTTCACATGATGATGATGGGAATGGTGTTCCAATCATCGGAAAGAAGGGTAAGACGAAGAAAGGTGGAAATAACAGTGCATTTATTAGTACGTCGAGTTTTTGTTTGCTCGAGGACGAGGAGGGAGAGGATGGTGCTGATAATGATGATGATGACGACGACAAGGAGGAAGGGGATGATTCTGAAATCAAGTTTTCGATTAAGAAGAAGTCGTCGAAGTCTTCCAAGAAGAGTGATTTTTGTGGAGTGTCAACATTCAATGCCCTTGATGTCGAGAAAGATGAAGATAGAACTGACAATGAGATCAAAGTTGAAGAAGGGATTGGCGATGAGCTTGTTTTTTCATTTACAGGCAAGAAGAAGTCATCAAAAGGTGATAGGAAGGGTGGGAATGCATATTCAGGTTTTAGTGGTCTTGATCATGATGATAAGGATGAGGATGAAAATGTTACAACTATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGTTAAGGGTTCAAAGAAAAGTGGAAATTCGTATACTGCAGCGTTGGCCGATGAGGATGACGAGCCAAATAAATTAGACAATGATGGTGTTGATGACAATGTTACTCCATTACGTGGTGAAAAGGCGTTTGGCAATGAAGATAGAGATGTTGTATTACCTGAAATACTCAGTACAGCAAGTAGCACTTTTAATTCTGATTTATCTAAGGCAAACAAGCTGGATGGGGTGGCACAAACTTCAAGAAATAAAAAGAAGAAGAAGAAGCAGAACAAGGGAAGGACTGCTCAAGAAGAAGATGATCTGGATAAGCTTTTTGCTGGCCTAGGAGTGGAGCCTGCTATATCAAAGCCAATAGAGCCTCCTCTTTCTTCACAAGTGGCCAAAGTTGAGAACCCACCTAAGCTTGTAGTTGTAGCTCCTCCTGAAGAAGAGAGCACGGAATCGGCTGCAACAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGAGAAAAAGGCTGCAGCCGCAGCGACAACGCCTGCTGAAGGGAATGATGATAAAATTGGAGAAGTGATGACCCAAATTGTAGAACCCAAAAAAGGTGCTACAAAGAGTAAAGTGGCAGAGAAGAAAGTGCCAAAGCATGTCAGGGAGATGCAAGAGGCAATGGCTAGGAGGAAAGAAGAAGAAGAGAGATGGAAAAGGGAAGAAGAAGAGAGACTGAGAAAGGAAGAAGAAGAGAGGCGTAAGCGAGAAGAACTTGAAAGGCAAGCGGAGGAGGCTAGGCGCAGGAAGAAGGAAAGAGAAAAAGAGAAACTTCTAAAGAAGAAACAGGAAGGCAAGCTGCTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAACTGCGGGGGGCTTACCTTTTGCTACATCTGATCCCAGTGCGCCAGCCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACAAATGGTAATGCACAAACGAAGGTAGTGGAACATATAGAAGAAATAATACAAGAAAAAGATGTGGTAGAGACTGCAATATTGGAGTCTGATAAGAACAAACCTGTTGAGTCAATGCACGTGGAGGAAAAATTAGATGTTATTGAGGCTACTGAGGATAATGAAACTCAAGAAGGTGAGGACGAGGACGAGGACGAGTGGGATGCAGAGAGTTGGGATGATGCTGTTGTTAATCTTTCCTTAAGTTCTATTGCTTATGAGGAGCTTGATCAAGCAGAAACTGAGAATGGCATGAAGAAAGTGAGAAAGAGTGATGCATCAACTTCATGTGCCGAGTCAAATGCCGCTGCCCAGAAAAGTTTACCTTCTCAGTCTACTCTAGATGTTGAAAACAAAAAGAAGCAGCCTGAGATTGAGCTTGTTAAGAAAAAAACTTCAACTTCAGATGCTACTCAACTGGTAGAAAATCTTCGGTCACCAATTTGTTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGCGAGGCAGGAGGAATCACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAAAACATTCGCGAAAGAACGAGAGAATTGAAAGCTGATGCAAAGTTGAGAGTTCCAGGCCTACTTGTTATTGATACCCCTGGCCACGAATCATTTACGAACTTACGTTCTCGCGGTTCGGGTTTAAGCGATCTTGCAATTTTGGTTGTGGATATCATGCATGGCTTAGAGCCACAAACAATAGAATCCCTTAATCTCTTGAGGATGAGAAACACAGAATTTATCATTGCTTTGAATAAGGTTGACAGACTTTTTGGGTGGAAAACAATCCGTAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATCAGTTCAATACGAAGCTTATTCGGATTATCACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGGATTCCAGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGGAGAAACTTACATATAGTGATGATGTGCAGTGTACCGTTTTAGAGGTCAAGGTTGTTGAAGGGCATGGAACGACTATTGATGTCATATTGGTTAATGGCGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTGTTCGAGCCCTACTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACTTATCTGCACCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATATCTGGACAGGGTCTTGAGCATGCCATTGCTGGAGCCAGTGTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATGAAGAATTCAGCAATGGACGATATGAAGTCGGTCTTGAGCGGGATAGACAAAACTGGAGAGGGAGTCTGTGTTCAAGCATCCACACTTGGATCCTTGGAAGCATTGTTGGAGTTTCTGAAGTCCCCGGCAGTTAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAGAGATGTCATGAAAGCAAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACCCAAGACGCTCGACAACTTTCGGATGAGCTCGGAGTGAACATTTTTAATGCCGATATCATTTATCACTTGTTCGACCGATTCAAGGCCTATATCGATAACCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAGGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTTTGTTAGGGGTGGAGGTAATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTGCAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAATTAATCACAAACCTGTTGAGTCTGCAAAGAAAGGGCAGAAGATTTCCATTAAGATTGCAGGGCACTCTTCAGAGGAGCAGCAAAAGATGTATGGCAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATTTCTAGGAAGTCAATTGATCTACTCAAAGCCAATTATCGGGATGATTTGTCCAAGGAGGAGTGGAATTTGGTGAAGAAATTGAAGAAGTTTTTCAAGATACAATGA | 3864 | 42.42 | MARKKPTARDDDSAPGGKLKKKTYAVDAMDFSVGTEVQEEKEEKSGSKASHDDDGNGVPIIGKKGKTKKGGNNSAFISTSSFCLLEDEEGEDGADNDDDDDDKEEGDDSEIKFSIKKKSSKSSKKSDFCGVSTFNALDVEKDEDRTDNEIKVEEGIGDELVFSFTGKKKSSKGDRKGGNAYSGFSGLDHDDKDEDENVTTISFSGKKKKSVKGSKKSGNSYTAALADEDDEPNKLDNDGVDDNVTPLRGEKAFGNEDRDVVLPEILSTASSTFNSDLSKANKLDGVAQTSRNKKKKKKQNKGRTAQEEDDLDKLFAGLGVEPAISKPIEPPLSSQVAKVENPPKLVVVAPPEEESTESAATRKKKKKKEKEKEKKAAAAATTPAEGNDDKIGEVMTQIVEPKKGATKSKVAEKKVPKHVREMQEAMARRKEEEERWKREEEERLRKEEEERRKREELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILATAGGLPFATSDPSAPAKRPKYQTKKSKPAHHQTNGNAQTKVVEHIEEIIQEKDVVETAILESDKNKPVESMHVEEKLDVIEATEDNETQEGEDEDEDEWDAESWDDAVVNLSLSSIAYEELDQAETENGMKKVRKSDASTSCAESNAAAQKSLPSQSTLDVENKKKQPEIELVKKKTSTSDATQLVENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLRVPGLLVIDTPGHESFTNLRSRGSGLSDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLFGWKTIRNAPILKTMKQQSKDVQNQFNTKLIRIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTEKLTYSDDVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTVRALLTPHPMKELRVKGTYLHHKEIKAAQGIKISGQGLEHAIAGASVHVVGPEDDLEDMKNSAMDDMKSVLSGIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKRDVMKASVMLEKKKEYATILAFDVKVTQDARQLSDELGVNIFNADIIYHLFDRFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPILLGVEVIEGIAKVGTPICIPAREFIDIGRIASIEINHKPVESAKKGQKISIKIAGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSKEEWNLVKKLKKFFKIQ | 1287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 37565286 | 37572477 | + | Sed0008881.1 | Sed10g2107 | 728611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g2107 | 1287 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1020 | 1149 | IPR036925 | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 301 | 315 | - | - | |
Sed10g2107 | 1287 | CDD | IF2_eIF5B | 698 | 908 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 630 | 671 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 265 | 287 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 108 | 124 | - | - | |
Sed10g2107 | 1287 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 694 | 986 | IPR027417 | - | |
Sed10g2107 | 1287 | FunFam | eukaryotic translation initiation factor 5B | 918 | 1037 | - | - | |
Sed10g2107 | 1287 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 695 | 911 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | Pfam | Elongation factor Tu domain 4 | 1157 | 1230 | IPR029459 | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 1 | 128 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 34 | 51 | - | - | |
Sed10g2107 | 1287 | Pfam | Elongation factor Tu GTP binding domain | 698 | 907 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | NCBIfam | small GTP-binding protein domain | 700 | 854 | IPR005225 | GO:0005525(InterPro) | |
Sed10g2107 | 1287 | PRINTS | GTP-binding elongation factor signature | 763 | 773 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | PRINTS | GTP-binding elongation factor signature | 815 | 824 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | PRINTS | GTP-binding elongation factor signature | 699 | 712 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | PRINTS | GTP-binding elongation factor signature | 779 | 790 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 85 | 107 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 590 | 607 | - | - | |
Sed10g2107 | 1287 | FunFam | Eukaryotic translation initiation factor 5B | 689 | 917 | - | - | |
Sed10g2107 | 1287 | Gene3D | - | 1038 | 1143 | IPR036925 | - | |
Sed10g2107 | 1287 | Pfam | Translation-initiation factor 2 | 1021 | 1136 | IPR023115 | - | |
Sed10g2107 | 1287 | Coils | Coil | 360 | 380 | - | - | |
Sed10g2107 | 1287 | CDD | aeIF5B_II | 920 | 1029 | - | - | |
Sed10g2107 | 1287 | Gene3D | Translation factors | 918 | 1037 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 630 | 644 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 166 | 496 | - | - | |
Sed10g2107 | 1287 | FunFam | Eukaryotic translation initiation factor 5B | 1150 | 1287 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 568 | 607 | - | - | |
Sed10g2107 | 1287 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 354 | 1285 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Sed10g2107 | 1287 | Gene3D | Translation factors | 1150 | 1287 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
Sed10g2107 | 1287 | Coils | Coil | 415 | 481 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 405 | 496 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 568 | 589 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 186 | 202 | - | - | |
Sed10g2107 | 1287 | SUPERFAMILY | Translation proteins | 1154 | 1286 | IPR009000 | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 645 | 667 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Sed10g2107 | 1287 | MobiDBLite | consensus disorder prediction | 509 | 545 | - | - | |
Sed10g2107 | 1287 | CDD | IF2_aeIF5B_IV | 1158 | 1253 | - | - | |
Sed10g2107 | 1287 | FunFam | Eukaryotic translation initiation factor 5B | 1037 | 1143 | - | - | |
Sed10g2107 | 1287 | Gene3D | - | 690 | 917 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0612 | Sed-Chr10:4045105 | Sed10g2107 | Sed-Chr10:37565286 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g2107 | K03243 | - | csv:101204360 | 1325.84 |