Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2108 ATGAACCCTAATTTCTCGCCGGCGATGGACATCGACCAGATGCCGGAGAATCCCCACCGTGCTTCCCTCCACCGCCGCTCCCACTCCGACACCTCCTTCCGCTTCCCAAACCTCGACGAGTTCCTCTTCTTCGACCCTGTAGACCTCGACCTCTCCATTCTCTCTTCCCCTTCTTCTCCCCCTTCCGCCGCCGCCGCCGCCATGCCCATCGATTCCTCCGATGACGCCTTCCGCCCTAAGCCCGAGCCTACCAACTCCGGATCCTTCGGCGGCCACCTGCGCAGCTTGTCGATGGACTCTGATTTTCTCAAGAATCTGGACCTTGGCGGCGATGGTGGCGAGATCGATTCTTTGGGGAGGAAAACTCCGGCGAGTGAACAGCGGCCAGTTCGTCATCGGCATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGACCGATTCAACCCTAGCGATTGATGGAGTGAAGAAGGCTATGGAACCGGATAGACTTGCGGAGCTAGCCTTACTTGACCCCAAAAGAGCTAAAAGGATTCTTGCGAATCGACAATCTGCAGCTCGTTCTAAAGAGAGGAAGGTACGTTACACGAATGAGCTGGAGAAGAAGGTTCAGACTCTGCAGTCTGAAGCCACCACTCTGTCTGCGCAGGTCACCATTTTCCAGAGAGATACTACTGGGTTAACCGTGGAAAATAAGGAACTCAAACTTCGGTTTCAGGCTATGGAGCAGCAAGCACAGCTTCGGGATGCTCTGACGGAAGCTTTGAAGGAAGAAGTTGAACGGCTTAGAATAGCCGCAGGCCAGGTTCCACCAATCAATGGAAATCATTTCAACCGACCTCCTCAATATCCATCATCCAGGCCGCCTGTCCACCATTTTAATAGCTCCCATGTCCAGCTCCAGCAGGGTCAGCAGCAGTCATCACCCATCATGGCCGCAAACCAGGTGCTATCAGATCCAAAATGGACAAACTTGTCCCATCTTCACGGTCATAATCCTGATGGCAAAGCAAAACCTTAG 1023 53.57 MNPNFSPAMDIDQMPENPHRASLHRRSHSDTSFRFPNLDEFLFFDPVDLDLSILSSPSSPPSAAAAAMPIDSSDDAFRPKPEPTNSGSFGGHLRSLSMDSDFLKNLDLGGDGGEIDSLGRKTPASEQRPVRHRHSLSMDGSSSSFETDSTLAIDGVKKAMEPDRLAELALLDPKRAKRILANRQSAARSKERKVRYTNELEKKVQTLQSEATTLSAQVTIFQRDTTGLTVENKELKLRFQAMEQQAQLRDALTEALKEEVERLRIAAGQVPPINGNHFNRPPQYPSSRPPVHHFNSSHVQLQQGQQQSSPIMAANQVLSDPKWTNLSHLHGHNPDGKAKP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37574587 37577602 + Sed0013936.1 Sed10g2108 728612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2108 340 MobiDBLite consensus disorder prediction 289 310 - -
Sed10g2108 340 MobiDBLite consensus disorder prediction 114 146 - -
Sed10g2108 340 MobiDBLite consensus disorder prediction 1 29 - -
Sed10g2108 340 MobiDBLite consensus disorder prediction 56 93 - -
Sed10g2108 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 235 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2108 340 Pfam bZIP transcription factor 174 217 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2108 340 Coils Coil 242 262 - -
Sed10g2108 340 FunFam Transcription factor VIP1 173 226 - -
Sed10g2108 340 CDD bZIP_plant_RF2 175 224 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2108 340 MobiDBLite consensus disorder prediction 271 310 - -
Sed10g2108 340 Coils Coil 197 217 - -
Sed10g2108 340 SUPERFAMILY Leucine zipper domain 174 225 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2108 340 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 10 308 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed10g2108 340 SMART brlzneu 170 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g2108 340 Gene3D - 173 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0479 Sed-Chr3:2914077 Sed10g2108 Sed-Chr10:37574587 4.80E-72 dispersed
Sed05g2280 Sed-Chr5:35370118 Sed10g2108 Sed-Chr10:37574587 3.10E-39 dispersed
Sed05g2281 Sed-Chr5:35370118 Sed10g2108 Sed-Chr10:37574587 3.10E-39 dispersed
Sed05g3342 Sed-Chr5:42715804 Sed10g2108 Sed-Chr10:37574587 2.20E-47 dispersed
Sed10g2108 Sed-Chr10:37574587 Sed11g1345 Sed-Chr11:29504717 1.30E-67 dispersed
Sed10g2108 Sed-Chr10:37574587 Sed10g2109 Sed-Chr10:37574587 1.10E-119 tandem
Sed10g2108 Sed-Chr10:37574587 Sed07g2862 Sed-Chr7:43351751 7.40E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39865 PF00170 bZIP_1 1.70E-07 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2108 K20557 - csv:101207973 515.383