Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g2108 | ATGAACCCTAATTTCTCGCCGGCGATGGACATCGACCAGATGCCGGAGAATCCCCACCGTGCTTCCCTCCACCGCCGCTCCCACTCCGACACCTCCTTCCGCTTCCCAAACCTCGACGAGTTCCTCTTCTTCGACCCTGTAGACCTCGACCTCTCCATTCTCTCTTCCCCTTCTTCTCCCCCTTCCGCCGCCGCCGCCGCCATGCCCATCGATTCCTCCGATGACGCCTTCCGCCCTAAGCCCGAGCCTACCAACTCCGGATCCTTCGGCGGCCACCTGCGCAGCTTGTCGATGGACTCTGATTTTCTCAAGAATCTGGACCTTGGCGGCGATGGTGGCGAGATCGATTCTTTGGGGAGGAAAACTCCGGCGAGTGAACAGCGGCCAGTTCGTCATCGGCATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGACCGATTCAACCCTAGCGATTGATGGAGTGAAGAAGGCTATGGAACCGGATAGACTTGCGGAGCTAGCCTTACTTGACCCCAAAAGAGCTAAAAGGATTCTTGCGAATCGACAATCTGCAGCTCGTTCTAAAGAGAGGAAGGTACGTTACACGAATGAGCTGGAGAAGAAGGTTCAGACTCTGCAGTCTGAAGCCACCACTCTGTCTGCGCAGGTCACCATTTTCCAGAGAGATACTACTGGGTTAACCGTGGAAAATAAGGAACTCAAACTTCGGTTTCAGGCTATGGAGCAGCAAGCACAGCTTCGGGATGCTCTGACGGAAGCTTTGAAGGAAGAAGTTGAACGGCTTAGAATAGCCGCAGGCCAGGTTCCACCAATCAATGGAAATCATTTCAACCGACCTCCTCAATATCCATCATCCAGGCCGCCTGTCCACCATTTTAATAGCTCCCATGTCCAGCTCCAGCAGGGTCAGCAGCAGTCATCACCCATCATGGCCGCAAACCAGGTGCTATCAGATCCAAAATGGACAAACTTGTCCCATCTTCACGGTCATAATCCTGATGGCAAAGCAAAACCTTAG | 1023 | 53.57 | MNPNFSPAMDIDQMPENPHRASLHRRSHSDTSFRFPNLDEFLFFDPVDLDLSILSSPSSPPSAAAAAMPIDSSDDAFRPKPEPTNSGSFGGHLRSLSMDSDFLKNLDLGGDGGEIDSLGRKTPASEQRPVRHRHSLSMDGSSSSFETDSTLAIDGVKKAMEPDRLAELALLDPKRAKRILANRQSAARSKERKVRYTNELEKKVQTLQSEATTLSAQVTIFQRDTTGLTVENKELKLRFQAMEQQAQLRDALTEALKEEVERLRIAAGQVPPINGNHFNRPPQYPSSRPPVHHFNSSHVQLQQGQQQSSPIMAANQVLSDPKWTNLSHLHGHNPDGKAKP | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 37574587 | 37577602 | + | Sed0013936.1 | Sed10g2108 | 728612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g2108 | 340 | MobiDBLite | consensus disorder prediction | 289 | 310 | - | - | |
Sed10g2108 | 340 | MobiDBLite | consensus disorder prediction | 114 | 146 | - | - | |
Sed10g2108 | 340 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed10g2108 | 340 | MobiDBLite | consensus disorder prediction | 56 | 93 | - | - | |
Sed10g2108 | 340 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 172 | 235 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2108 | 340 | Pfam | bZIP transcription factor | 174 | 217 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2108 | 340 | Coils | Coil | 242 | 262 | - | - | |
Sed10g2108 | 340 | FunFam | Transcription factor VIP1 | 173 | 226 | - | - | |
Sed10g2108 | 340 | CDD | bZIP_plant_RF2 | 175 | 224 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2108 | 340 | MobiDBLite | consensus disorder prediction | 271 | 310 | - | - | |
Sed10g2108 | 340 | Coils | Coil | 197 | 217 | - | - | |
Sed10g2108 | 340 | SUPERFAMILY | Leucine zipper domain | 174 | 225 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2108 | 340 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 10 | 308 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed10g2108 | 340 | SMART | brlzneu | 170 | 234 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g2108 | 340 | Gene3D | - | 173 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0479 | Sed-Chr3:2914077 | Sed10g2108 | Sed-Chr10:37574587 | 4.80E-72 | dispersed | |
Sed05g2280 | Sed-Chr5:35370118 | Sed10g2108 | Sed-Chr10:37574587 | 3.10E-39 | dispersed | |
Sed05g2281 | Sed-Chr5:35370118 | Sed10g2108 | Sed-Chr10:37574587 | 3.10E-39 | dispersed | |
Sed05g3342 | Sed-Chr5:42715804 | Sed10g2108 | Sed-Chr10:37574587 | 2.20E-47 | dispersed | |
Sed10g2108 | Sed-Chr10:37574587 | Sed11g1345 | Sed-Chr11:29504717 | 1.30E-67 | dispersed | |
Sed10g2108 | Sed-Chr10:37574587 | Sed10g2109 | Sed-Chr10:37574587 | 1.10E-119 | tandem | |
Sed10g2108 | Sed-Chr10:37574587 | Sed07g2862 | Sed-Chr7:43351751 | 7.40E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39865 | PF00170 | bZIP_1 | 1.70E-07 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g2108 | K20557 | - | csv:101207973 | 515.383 |