Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g2110 | ATGGCTCTGCTGATACTGTTGGTTGTTGTGTTCTTGTTTGTGGTATCAGCTGCTTTCTTGATTGTGCGTTCATGGAGTTGGCCAAAGGCAATGGAGAAGATTCCTGGGAATTTGGGTTGGCCTGTTGTTGGTGAAACTTTGTCTTTTATATCAGAGTTTGGTAGCCCTGCTGGTATTTGCAGCTTCATGATCAACAGGCAGAAGAGGTTTGGAAAGGTTTTCAAGACCAGTGTGCTAGGGAGATTGATGGTGTTCATGACGGGGAGCGACGCCGCCAAGATTTTACTGACAGGGAAGGATGGCATGGTGAGCTTGAACCTGTTCTACACAGGCAAGCAAGTACTTGGCCAGAGCAGCTTGCTTCAGACCAATGGTGAAGCTCACAAGAGGTTGCGTCGGCTTATCGGAGAACCGCTCTCAATAGATGGCTTAAGGAAATACTTTCAGTTCATCAATAATTTGGCCATTGAAACTCTAGATGAATGGTCTGGAAGAACAATTTTTGTTCTTGATGAAGCTTCCACATTTACTCTTAAAGTTATCAGTAACATGATCATGAGCTTGGAGCCTGAAGGTGAAGAGCAAGAGAAGTTTAGAGACAATTTCAAAATCATCTCTTCTTGTTTTTCATCTTTGCCCCTTAACGTTCCCGGAACTGCTTTCTATCGCGGTATGAAGGCACGCAAACAAATGTTTGAGATGTTAGATTCGATCATCGCAAAGCGGCGGAGCGGAGAAATTTGTCGACAGGATTTCTTGGATTCACTAATAATCAAACACAACAAGGAAGGAGGAGACAGTAATGAAGAAAAACTCACAGATGCACAATTGAAAGACAATATATTAACTCTGCTGATTGCTGGCCATGACACAACTACTGCAGCTCTCACTTGGCTGATCAAATTTCTTGGAGAAAATCCCCATGTTTTGGATCAACTCAGAATTGAACACCAACAGATTAAAGCAAAGAGAAATGGAGAAAACCTCTCATGGGCTGATGTTAACAACTTGCCTTACACTGCAAAAGTGCTCAGTGAAACTCTGAGGAGAGCAACTATTCTACCATGGTATTCAAGAAAAGCTGCTCAAGACTTTGAAATTGCTGGATACAAGATCATGAAAGGGTGGTCAGTAAATTTGGATGTTGTTTCAATTCACCATGATGCTAATGTTTTTCCTGAACCCAACAAGTTTGATCCATCAAGATTTGAGGCACCATTGAAGCCTTTCAGCTTTCTTGGATTTGGAAGTGGCCCAAGAATGTGCCCTGGAATCAACTTGGCAAAGCTGGAAATTTCAGTGTTCATCCATCACCTTGTCTGCAAATACAGATGGACATCTTTGGAAGATGATGATAATTCAGTGCAGCCAACTTTAGTGAGGATGCCTAAGAACAAATATCCAGTTAGAATGGAGCCACTGTGA | 1425 | 42.32 | MALLILLVVVFLFVVSAAFLIVRSWSWPKAMEKIPGNLGWPVVGETLSFISEFGSPAGICSFMINRQKRFGKVFKTSVLGRLMVFMTGSDAAKILLTGKDGMVSLNLFYTGKQVLGQSSLLQTNGEAHKRLRRLIGEPLSIDGLRKYFQFINNLAIETLDEWSGRTIFVLDEASTFTLKVISNMIMSLEPEGEEQEKFRDNFKIISSCFSSLPLNVPGTAFYRGMKARKQMFEMLDSIIAKRRSGEICRQDFLDSLIIKHNKEGGDSNEEKLTDAQLKDNILTLLIAGHDTTTAALTWLIKFLGENPHVLDQLRIEHQQIKAKRNGENLSWADVNNLPYTAKVLSETLRRATILPWYSRKAAQDFEIAGYKIMKGWSVNLDVVSIHHDANVFPEPNKFDPSRFEAPLKPFSFLGFGSGPRMCPGINLAKLEISVFIHHLVCKYRWTSLEDDDNSVQPTLVRMPKNKYPVRMEPL | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 37578772 | 37583689 | + | Sed0017116.1 | Sed10g2110 | 728614 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g2110 | 474 | SUPERFAMILY | Cytochrome P450 | 28 | 473 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 415 | 424 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g2110 | 474 | Gene3D | Cytochrome P450 | 26 | 474 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | Pfam | Cytochrome P450 | 35 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 381 | 405 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 296 | 322 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 341 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 412 | 422 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 422 | 445 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | E-class P450 group I signature | 276 | 293 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | CDD | CYP90-like | 66 | 473 | - | - | |
| Sed10g2110 | 474 | PANTHER | CYTOCHROME P450 26 | 33 | 448 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Sed10g2110 | 474 | PRINTS | P450 superfamily signature | 287 | 304 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | P450 superfamily signature | 413 | 422 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | P450 superfamily signature | 342 | 353 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | PRINTS | P450 superfamily signature | 422 | 433 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g2110 | 474 | FunFam | Cytochrome P450 family 722 subfamily A polypeptide 1 | 24 | 474 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g2110 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0936 | Sed-Chr10:7537527 | Sed10g2110 | Sed-Chr10:37578772 | 3.50E-79 | dispersed | |
| Sed10g0961 | Sed-Chr10:7849844 | Sed10g2110 | Sed-Chr10:37578772 | 1.40E-45 | dispersed | |
| Sed10g2110 | Sed-Chr10:37578772 | Sed13g0736 | Sed-Chr13:5209111 | 6.50E-78 | dispersed | |
| Sed12g2502 | Sed-Chr12:34536214 | Sed10g2110 | Sed-Chr10:37578772 | 1.10E-09 | dispersed | |
| Sed10g2110 | Sed-Chr10:37578772 | Sed11g1049 | Sed-Chr11:25789454 | 1.40E-83 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g152 | . | . | . | Bda03g00302 | . | Bpe04g00264 | Bma04g00266 | . | . | . | . | Cma09g00081 | . | . | . | Cpe06g00045 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Sed10g2110 | . | Cmo09g00080 | . | . | . | Car09g00070 | . | . | Bhi09g01887 | Tan01g3346 | Cmetu01g0289 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi19g494 | . | . | Bda07g00357 | Bda09g00396 | . | . | . | . | . | . | . | Cma09g00945 | . | Car09g00859 | Sed10g2110 | Cpe06g00761 | . | Bhi09g01887 | Tan01g3346 | Cmetu01g0289 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo09g00944 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012720 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 27 |