Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2119 ATGGCTCGTGGGAAAGTTCAAATGAAGAGAATCGAGAATCCGGTGCACCGACAAGTGACCTTTTGCAAGCGCCGAGCCGGGCTCCTTAAGAAGGCTAACGAGCTCTCCGTGCTCTGCGATGCTCAAATTGGACTATTCATCTTCTCCGCCCATGGAAAGCTCTACGAACTCGCCACCAAAGGAAGCATGCAAGGGCTTATAGACAGGTACATGAAGCACACCAATAGGAATCAGCCACCAGACCCACCCATTGATACCCAAACTCTGGAAGTAAAGGAGGAGGTCAACATGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGAATGCTTTTGGTGGAGGAATGGAAGGAATAATGACATTGGATGAGCTTGAAATGTTTGAGAAGCAACTTGAGATTTGGATTTGGCAAGTCCGTTCAACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCATTGAGAAACCAGGAATTAATACTGAAAGCTGCCAACAAATATCTTCATGATAAGATGGAGGAAAACATTAGCAACACAACTGACATTGAAGCTGTGAATATTACTAACTTTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTGA 618 43.37 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKANELSVLCDAQIGLFIFSAHGKLYELATKGSMQGLIDRYMKHTNRNQPPDPPIDTQTLEVKEEVNMLKQEIEVLKGLRNAFGGGMEGIMTLDELEMFEKQLEIWIWQVRSTKMKFMCEEIEALRNQELILKAANKYLHDKMEENISNTTDIEAVNITNFQYPLTIQDELFQLCT 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37656154 37661053 - Sed0005726.1 Sed10g2119 728623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2119 205 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g2119 205 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g2119 205 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed10g2119 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 Pfam K-box region 88 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g2119 205 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2119 205 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2119 Sed-Chr10:37656154 Sed09g0102 Sed-Chr9:760950 9.80E-31 dispersed
Sed10g2119 Sed-Chr10:37656154 Sed10g2121 Sed-Chr10:37691019 8.30E-30 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39867 PF01486 K-box 2.50E-17 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2119 - - - 0.0