Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2121 ATGGGAAGAGGGAAAATAGAGATAAAGAGAATAGAAAACACAACAAATAGACAGGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAAAAAGCATATGAACTCTCTGTGCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTAGCCGCGGCCGTCTCTATGAGTACTCCAACAACAGCGTCAGAACTACTATTGAGAGGTACAAAAAGGCTTGTTCTGATAGTTCAGCTACGAGCTCTGTCACTGAACTTAATACTCAATATTATCAGCAAGAATCGGCAAAGCTGCGCCAACAAATACAAATGCTTCAGAATTCAAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTCACAGTGAAAGAACTGAAGCAGCTTGAGAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCCAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTACAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTGGAGAGGCTTCAACAAGCAAACATGGTGTCTGGACAAGAACTGAATGCCATAGAAGCATTGGCTTCTAGAAACTTCTTCTCTTCTAATATGATGGAAGGTGGTGGAGCTGTCACTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTAA 675 41.78 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVRTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIEALASRNFFSSNMMEGGGAVTFSHQDKKMLHLG 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37691019 37700681 + Sed0005214.1 Sed10g2121 728625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2121 224 Gene3D - 14 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g2121 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g2121 224 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 Coils Coil 124 163 - -
Sed10g2121 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g2121 224 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g2121 224 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed10g2121 224 FunFam agamous-like MADS-box protein AGL11 13 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0390 Sed-Chr9:3635811 Sed10g2121 Sed-Chr10:37691019 1.60E-19 dispersed
Sed10g0194 Sed-Chr10:1137633 Sed10g2121 Sed-Chr10:37691019 1.40E-71 dispersed
Sed10g2121 Sed-Chr10:37691019 Sed14g1542 Sed-Chr14:23620914 1.70E-68 dispersed
Sed13g0960 Sed-Chr13:7365479 Sed10g2121 Sed-Chr10:37691019 6.30E-22 dispersed
Sed10g2119 Sed-Chr10:37656154 Sed10g2121 Sed-Chr10:37691019 8.30E-30 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39868 PF01486 K-box 8.70E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2121 K09264 - csv:101208072 412.149