Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2126 ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCGGTTGCCCCCTTCTCTCCCTCACTCCGATCTCTTCCTCCATATTCACGATCGATTCGCCGGCCGCTACAATTCCTCTTACTTTCGTCCCGGAAACACCAGTCAGAAGGGCCAGAGGAACGCTCGGGCCTACATAGATTTTACCAGACCTGATGATGTTCTTGAGTTTGCGGAGTTCTTTGACGGCCATGTTTTTGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCGTCTACCAAGAAAGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTCTCAAATTCATTGCAAAGCCTGTTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATATGGTGGTGGAAAGGAACCTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGTCAGAGACGAGCAGTTGAAAGTGGAACTCAGGGATCTACAGTACCTCGGAAGGTTAAAAGAGGCGGAGCAGCATCCTCTAGAAAGCCCGAGTCTTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGTGAAGAACTCAAACCGTAGAGACAAGTCAAATTTCATTTTGGTGTCCAGGCGAGAGGATCAGTCAGCCACGTCAGGTGGAATTGGAATTTCTGATGTCGCTGACTCTGGAAAGAAAAGAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCACATATTGCTAATGGAATGTTACAGTTGCAGAGTGCAACATCTTCTGGGAATTCTCCTGCTAGTGCTACAAAACAGAATCAGAGGCGTGATGCTGGTGGAAGCATGATCAGAAGCATTCTTGTAAATAATGAAGCTCGTCATGGACAGAGTACATCAGTAGCCCAGTCTCATCACAAAATTCAGATCCTAAACTCAGACAATGGGAAGCGACCTCCTCGTTCCATTAATGCTCGATCTGGGTCTAACGACATGTCCAGCAACGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTACAGAAAGTAAGTTTAATAAAAAGGAACTTCATGGCCTAGGTAATGCTAGTGAGAAGCAAGAAAAGCGAATAAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCTCCACGTAGTCGTTCAGATGCACCAGTCTCACAACTTGATGAATTCTCTGTTTCACAATCTAGTCATTTGCCTTCGAACTCGATTGAAGCATACCGTGGGGAAATGAAAGATGATATTCATGGAAGCAGGAGTGGGGATGTTACAACCACTATGGGTGGTCGTAGCAGTTCATTGGAGAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGGTGGCCATGTTATGAAGGATGATGGCTCTTTGAACCCGAATGAAGGGAAGCCACCAAAAAGAGGTGTTGCTGGTGGATATGAGGTTTTCTTCTGGATCTAA 1512 45.3 MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMKRGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRGVWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGYEVFFWI 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37705368 37714177 + Sed0004336.4 Sed10g2126 728630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2126 503 Pfam Smg-4/UPF3 family 6 167 IPR005120 -
Sed10g2126 503 Gene3D - 2 97 IPR012677 -
Sed10g2126 503 MobiDBLite consensus disorder prediction 409 425 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 444 462 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 273 295 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 437 493 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 361 400 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 309 425 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 309 356 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 168 242 - -
Sed10g2126 503 MobiDBLite consensus disorder prediction 195 226 - -
Sed10g2126 503 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 465 IPR039722 GO:0000184(PANTHER)|GO:0000184(InterPro)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0045727(PANTHER)
Sed10g2126 503 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676(InterPro)
Sed10g2126 503 CDD RRM_like_Smg4_UPF3 9 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2126 K14328 - - csv:101208317 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2123 Sed-Chr10:37705368 Sed10g2126 Sed-Chr10:37705368 8.90E-283 dispersed
Sed10g2124 Sed-Chr10:37705368 Sed10g2126 Sed-Chr10:37705368 5.50E-277 dispersed
Sed10g2125 Sed-Chr10:37705368 Sed10g2126 Sed-Chr10:37705368 2.40E-258 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1466 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00041 Cam08g0040 Cec08g0212 Cco08g0093 Clacu08g0056 Cmu08g0054 Cre08g0044 . . . . . . . . . . . . . . . . Sed10g2126 . . . . . . . . Bhi06g00236 Tan10g2035 Cmetu09g1975 . . . . . . . . . . . Lsi08g00031 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49