Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g2138 ATGCAATCATCATCCACAAGTGGTGGCGGTGGAAGTGGAAGTGGGCTCGCTCGGTTCCGGTCTGCTCCGGCGACGTGGTTGGAAGCACTGTTGGAGGATACAGAGGAGGAGGAGGACCCACTGATCCCTAAGCCCAATCAGTGCCTGACTCAGCTTCTGGCGGCCGCTCCGGATGAGAGCCTGTTCGAGCCCAACCCCTCCTTCCAAAGGCAAAACAGCTCTCCGGCTCAATTTCTCGCCGCCGCTGCAGACCCTTTTTACTCCCAGAACTATGCCCTCAATTCCAACAACCTCCACCTGAAACGGGAAGAAAGTAATAGTAGTAGTAGCGGAGTTTCCAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCTGTCGCCTGCCGCGTCAGGGCCAAGCGTGGCTGTGCTACTCATCCTCGGAGCATTGCGGAGAGGGTTCGAAGGACTAAAATTAGTGACAGAATAAGGAAGCTCCAGGAGGTTGTCCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTGGAAGAAGCAGTAGAGTATGTCAAATACCTTCAAAAGCAGATTCAGGAACTTACCGAGCATCAGCGCAGGTGCAAATGCATGGTTAAGGAATAG 627 52.47 MQSSSTSGGGGSGSGLARFRSAPATWLEALLEDTEEEEDPLIPKPNQCLTQLLAAAPDESLFEPNPSFQRQNSSPAQFLAAAADPFYSQNYALNSNNLHLKREESNSSSSGVSSLIDMEMEKLLEDSVACRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQELTEHQRRCKCMVKE 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37798348 37807615 - Sed0003375.1 Sed10g2138 728642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g2138 208 SMART finulus 144 194 IPR011598 GO:0046983(InterPro)
Sed10g2138 208 Gene3D - 139 208 IPR036638 GO:0046983(InterPro)
Sed10g2138 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 205 IPR036638 GO:0046983(InterPro)
Sed10g2138 208 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 201 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed10g2138 208 CDD bHLH_AtbHLH_like 143 195 IPR045239 -
Sed10g2138 208 Coils Coil 178 198 - -
Sed10g2138 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 188 IPR011598 GO:0046983(InterPro)
Sed10g2138 208 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983(InterPro)
Sed10g2138 208 FunFam Transcription factor bHLH130 family 139 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2138 Sed-Chr10:37798348 Sed12g1587 Sed-Chr12:26028822 2.50E-26 dispersed
Sed10g2138 Sed-Chr10:37798348 Sed02g0333 Sed-Chr2:39748139 8.70E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39870 PF00010 HLH 6.80E-11 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g2138 - - - 0.0