Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0010 ATGAGGCCGCCATGGATGAAGAAGGACAGCTCCATGAATCCCAACTTGAAGCTTGTTCTTCCTCCCTCCGATGAAGTCCCCTTCGCCTTCATAACCCAAGGCGGTACTTTCACGGATGGCGATTTGCTTGTCAATCGAGACGGCGTCCGGATCGTGTCTCAAGCGGAAGACGAAAGTCCTCCGCCAATAAAGCCCTCGGACAACCATTTGTCTCTAGCAGATTTAGATTCAATTAAAGTCGTTGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAAATGAATGTCGAGGAGTCTCGATGTAAGATGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCATACATTGTTGTCTGTTACCAGATATTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGTTCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCCTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATATCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCCTCTAATTTGTTGATAAATCATAGAGGTGAAGTTAAGGTTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCCGATCAGGCACAAACTTTCGTTGGCACTTATGCTTACATGTCTCCCGAGAGACTAAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTGGAATGTGCAACTGGTCAATTTCCATATGCTCCACCAAATAAGGATAAAGGATGGGAAGGATTTTTTGATGTAATGGTAGCTGTTGTAGAATTAGCTTCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGGTATACAAGTTTTTGTGTTTGCTAA 966 42.03 MRPPWMKKDSSMNPNLKLVLPPSDEVPFAFITQGGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVVGKGNGGIVQLVRHKWTNQFFALKVIQMNVEESRCKMVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKVTDFGVSAILASTSDQAQTFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPNKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSWYTSFCVC 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 81741 85554 + Sed0020907.2 Sed11g0010 728656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0010 321 FunFam Mitogen-activated protein kinase kinase 1 56 154 - -
Sed11g0010 321 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 48 313 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed11g0010 321 CDD PKc_MAPKK_plant_like 73 312 - -
Sed11g0010 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0010 321 Gene3D Transferase(Phosphotransferase) domain 1 155 316 - -
Sed11g0010 321 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Sed11g0010 321 ProSiteProfiles Protein kinase domain profile. 75 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0010 321 SUPERFAMILY Protein kinase-like (PK-like) 61 313 IPR011009 -
Sed11g0010 321 Pfam Protein kinase domain 78 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0010 321 SMART serkin_6 75 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0010 321 Gene3D Phosphorylase Kinase; domain 1 53 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0010 K20603 - - csv:101206374 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0010 Sed-Chr11:81741 Sed11g0012 Sed-Chr11:81741 8.60E-183 dispersed
Sed11g0009 Sed-Chr11:81741 Sed11g0010 Sed-Chr11:81741 7.40E-183 tandem
Sed11g0010 Sed-Chr11:81741 Sed11g0011 Sed-Chr11:81741 7.40E-118 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0890 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed08g0891 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed12g1735 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1736 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1737 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed11g0009 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0012 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0010 . 32 312 MAP Kinase Kinase Gene Family AT4G26070 67.0 1.4e-109 394.0
Sed03g1751 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 1.8e-106 383.6
Sed11g0011 . 1 249 MAP Kinase Kinase Gene Family AT4G26070 65.2 1.6e-94 344.0
Sed03g1752 . 26 242 MAP Kinase Kinase Gene Family AT4G26070 52.5 5.6e-63 239.2
Sed08g0890 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed08g0891 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed12g1735 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1736 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1737 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed11g0009 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0012 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.3e-109 394.0
Sed03g1751 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.8 1.5e-108 390.6
Sed11g0011 . 1 223 MAP Kinase Kinase Gene Family AT4G29810 65.6 4.8e-83 305.8
Sed03g1752 . 10 239 MAP Kinase Kinase Gene Family AT4G29810 58.8 6.3e-75 278.9
Sed08g1406 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.7 8.9e-227 783.9
Sed06g0519 . 101 432 MAP Kinase Kinase Gene Family AT5G40440 59.4 1.6e-111 401.0
Sed11g0011 . 35 247 MAP Kinase Kinase Gene Family AT5G40440 52.3 1.4e-57 221.9
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.0 9.4e-133 471.1
Sed06g0045 . 68 352 MAP Kinase Kinase Gene Family AT1G51660 75.1 2.3e-123 439.9
Sed01g1782 . 3 313 MAP Kinase Kinase Gene Family AT1G51660 50.2 2.3e-83 307.0
Sed08g2774 . 52 320 MAP Kinase Kinase Gene Family AT1G51660 53.2 7.0e-80 295.4
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 66.5 1.3e-128 457.2
Sed06g0045 . 66 352 MAP Kinase Kinase Gene Family AT3G21220 73.5 2.0e-124 443.4
Sed01g1782 . 32 311 MAP Kinase Kinase Gene Family AT3G21220 53.9 5.5e-82 302.4
Sed08g2774 . 52 316 MAP Kinase Kinase Gene Family AT3G21220 52.8 3.9e-80 296.2
Sed03g1751 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 82.8 4.2e-170 595.1
Sed12g1735 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1736 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1737 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed08g0890 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed08g0891 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed11g0009 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed11g0012 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed03g1752 . 1 234 MAP Kinase Kinase Gene Family AT5G56580 83.4 2.0e-108 390.2
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.5e-95 347.4
Sed11g0011 . 1 238 MAP Kinase Kinase Gene Family AT5G56580 60.4 3.3e-82 303.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G18350 64.2 2.8e-106 382.9
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G18350 60.6 2.2e-103 373.2
Sed06g0045 . 68 325 MAP Kinase Kinase Gene Family AT1G18350 51.9 4.4e-75 279.3
Sed01g1782 . 1 295 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.8e-77 285.4
Sed08g2774 . 52 302 MAP Kinase Kinase Gene Family AT3G06230 56.1 2.9e-76 283.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G73500 66.7 7.7e-112 401.4
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G73500 63.7 6.1e-109 391.7
Sed06g0045 . 69 325 MAP Kinase Kinase Gene Family AT1G73500 52.1 1.1e-76 284.6
Sed06g2275 . 72 331 MAP Kinase Kinase Gene Family AT1G73500 51.7 5.2e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79875 PF00069 Pkinase 7.00E-61 CL0016 Sed PK