Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0011 | ATGAATGTCGAGGAGTCTCGATGTAAGATGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCATACATTGTTGTCTGTTACCAGATATTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGTTCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCCTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATATCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCCTCTAATTTGTTGATAAATCATAGAGGTGAAGTTAAGGTTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCCGATCAGGCACAAACTTTCGTTGGCACTTATGCTTACATGTCTCCCGAGAGACTAAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTGGAATGTGCAACTGGTCAATTTCCATATGCTCCACCAAATAAGGATAAAGGATGGGAAGGATTTTTTGATGTAATGGTAGCTGTTGTAGAATTAGCTTCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAGGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATTAAAAAGTTCGAGCACTTTGACGTGGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA | 756 | 41.14 | MNVEESRCKMVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKVTDFGVSAILASTSDQAQTFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPNKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQRRSSARELLVHPFIKKFEHFDVDLAAYFKDAGSPLATF | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 81741 | 85554 | + | Sed0020907.3 | Sed11g0011 | 728657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0011 | 251 | SMART | serkin_6 | 2 | 227 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0011 | 251 | Gene3D | Transferase(Phosphotransferase) domain 1 | 48 | 246 | - | - | |
Sed11g0011 | 251 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 86 | 98 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0011 | 251 | SUPERFAMILY | Protein kinase-like (PK-like) | 5 | 232 | IPR011009 | - | |
Sed11g0011 | 251 | FunFam | Mitogen-activated protein kinase kinase 6 | 49 | 246 | - | - | |
Sed11g0011 | 251 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 47 | - | - | |
Sed11g0011 | 251 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 2 | 247 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed11g0011 | 251 | ProSiteProfiles | Protein kinase domain profile. | 1 | 227 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0011 | 251 | PIRSF | ILK | 2 | 231 | - | - | |
Sed11g0011 | 251 | Pfam | Protein kinase domain | 5 | 227 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0011 | 251 | CDD | PKc_MAPKK_plant_like | 1 | 231 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0011 | Sed-Chr11:81741 | Sed12g1735 | Sed-Chr12:28490804 | 1.90E-105 | dispersed | |
Sed11g0010 | Sed-Chr11:81741 | Sed11g0011 | Sed-Chr11:81741 | 7.40E-118 | tandem | |
Sed11g0011 | Sed-Chr11:81741 | Sed11g0012 | Sed-Chr11:81741 | 6.60E-146 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79876 | PF00069 | Pkinase | 2.30E-61 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0011 | K20603 | - | csv:101206374 | 486.493 |