Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0011 ATGAATGTCGAGGAGTCTCGATGTAAGATGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCATACATTGTTGTCTGTTACCAGATATTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGTTCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCCTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATATCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCCTCTAATTTGTTGATAAATCATAGAGGTGAAGTTAAGGTTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCCGATCAGGCACAAACTTTCGTTGGCACTTATGCTTACATGTCTCCCGAGAGACTAAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTGGAATGTGCAACTGGTCAATTTCCATATGCTCCACCAAATAAGGATAAAGGATGGGAAGGATTTTTTGATGTAATGGTAGCTGTTGTAGAATTAGCTTCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAGGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATTAAAAAGTTCGAGCACTTTGACGTGGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 756 41.14 MNVEESRCKMVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKVTDFGVSAILASTSDQAQTFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPNKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQRRSSARELLVHPFIKKFEHFDVDLAAYFKDAGSPLATF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 81741 85554 + Sed0020907.3 Sed11g0011 728657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0011 251 SMART serkin_6 2 227 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0011 251 Gene3D Transferase(Phosphotransferase) domain 1 48 246 - -
Sed11g0011 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0011 251 SUPERFAMILY Protein kinase-like (PK-like) 5 232 IPR011009 -
Sed11g0011 251 FunFam Mitogen-activated protein kinase kinase 6 49 246 - -
Sed11g0011 251 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Sed11g0011 251 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 247 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed11g0011 251 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0011 251 PIRSF ILK 2 231 - -
Sed11g0011 251 Pfam Protein kinase domain 5 227 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0011 251 CDD PKc_MAPKK_plant_like 1 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0011 Sed-Chr11:81741 Sed12g1735 Sed-Chr12:28490804 1.90E-105 dispersed
Sed11g0010 Sed-Chr11:81741 Sed11g0011 Sed-Chr11:81741 7.40E-118 tandem
Sed11g0011 Sed-Chr11:81741 Sed11g0012 Sed-Chr11:81741 6.60E-146 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79876 PF00069 Pkinase 2.30E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0011 K20603 - csv:101206374 486.493