Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0012 ATGAGGCCGCCATGGATGAAGAAGGACAGCTCCATGAATCCCAACTTGAAGCTTGTTCTTCCTCCCTCCGATGAAGTCCCCTTCGCCTTCATAACCCAAGGCGGTACTTTCACGGATGGCGATTTGCTTGTCAATCGAGACGGCGTCCGGATCGTGTCTCAAGCGGAAGACGAAAGTCCTCCGCCAATAAAGCCCTCGGACAACCATTTGTCTCTAGCAGATTTAGATTCAATTAAAGTCGTTGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAAATGAATGTCGAGGAGTCTCGATGTAAGATGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCATACATTGTTGTCTGTTACCAGATATTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGTTCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCCTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATATCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCCTCTAATTTGTTGATAAATCATAGAGGTGAAGTTAAGGTTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCCGATCAGGCACAAACTTTCGTTGGCACTTATGCTTACATGTCTCCCGAGAGACTAAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTGGAATGTGCAACTGGTCAATTTCCATATGCTCCACCAAATAAGGATAAAGGATGGGAAGGATTTTTTGATGTAATGGTAGCTGTTGTAGAATTAGCTTCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAGGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATTAAAAAGTTCGAGCACTTTGACGTGGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1077 42.8 MRPPWMKKDSSMNPNLKLVLPPSDEVPFAFITQGGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVVGKGNGGIVQLVRHKWTNQFFALKVIQMNVEESRCKMVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKVTDFGVSAILASTSDQAQTFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPNKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQRRSSARELLVHPFIKKFEHFDVDLAAYFKDAGSPLATF 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 81741 85554 + Sed0020907.4 Sed11g0012 728658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0012 358 SUPERFAMILY Protein kinase-like (PK-like) 61 340 IPR011009 -
Sed11g0012 358 SMART serkin_6 75 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0012 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0012 358 FunFam Mitogen-activated protein kinase kinase 6 156 353 - -
Sed11g0012 358 Gene3D Phosphorylase Kinase; domain 1 53 154 - -
Sed11g0012 358 ProSiteProfiles Protein kinase domain profile. 75 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0012 358 CDD PKc_MAPKK_plant_like 73 338 - -
Sed11g0012 358 Gene3D Transferase(Phosphotransferase) domain 1 155 353 - -
Sed11g0012 358 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Sed11g0012 358 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 49 354 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed11g0012 358 FunFam Mitogen-activated protein kinase kinase 1 56 154 - -
Sed11g0012 358 Pfam Protein kinase domain 78 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0009 Sed-Chr11:81741 Sed11g0012 Sed-Chr11:81741 1.40E-210 dispersed
Sed11g0010 Sed-Chr11:81741 Sed11g0012 Sed-Chr11:81741 8.60E-183 dispersed
Sed11g0012 Sed-Chr11:81741 Sed12g1735 Sed-Chr12:28490804 6.10E-145 dispersed
Sed11g0011 Sed-Chr11:81741 Sed11g0012 Sed-Chr11:81741 6.60E-146 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79877 PF00069 Pkinase 1.10E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0012 K20603 - csv:101206374 663.685