Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0026 ATGGCAGAAATGGTGATCGGCGATAAACCAAACCGCCCTAACCAGACGCTTCTCATTCCTCCATGGACGTTTATGGATGATCCGCCGTCGGATGTGTGCAGTTATTCTCCGGGAAGCGGCGGAGGTGGATTCTCTCCCTACGCCATTCCGGACAAAAACGCCTTGTTGCAGCAGTATTTTCTCTGGAAAGAAGCGGAGATGGAGTCGGAATTTGATGTTTCAGGGCGGGAGTTGGATGCCTACTCCACCGATAAGTTCCGAATGTATGAGTTCAAGATCAAGAAGTGCACGAGAGGAAGATCGCACGATTGGACGGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCGCGGCGGCGAGATCCGAAGAGGTATTACTATTCCGGTACGGCGTGTGCGGAGTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTTCGCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTACCGGACTCAGCCGTGCAAGGACGGGACTAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGGCGGAGCAGCTTCGGGTTTTGCCTCAGCAGAGTCCAAAGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGCCAAGCGTTTGAGGCCTGTGCGAAACAAATCTCGTATTTATCTTCGCCGGGAACATCGCCGCCGTTTTCGCCTCCAATCGAGTCTCCGCCTCAATCGCCGATGATCAGATCGTTGAATCGGCCGATTTTACAGATCGGTAAGGTAGTACAATCGCCTTCTTCTTCTCCGTGGAATGTTTCTGTATTCGGATGTCCAGATGAATCCACCACCGGATCCGGTTTCTGCAGCCTTCCAGATACTCCGACTCGTCCAACCAGCCGATTTCTCGACTTGTGGGAGCTAGGTTCCGGCGAGGGACCGGCAATGGAGCGAGTCGAGTCCGGGAGAGATCTACGAGCGAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGATAAATACGATTGGGTCTCGGAGCTGCTTGGCGGTGGTAATTAA 1062 53.77 MAEMVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLWKEAEMESEFDVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSPPIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVGCGDQDKYDWVSELLGGGN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 181821 183289 - Sed0003406.1 Sed11g0026 728672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0026 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872(InterPro)
Sed11g0026 353 Gene3D - 122 196 - -
Sed11g0026 353 SMART c3hfinal6 125 151 IPR000571 GO:0046872(InterPro)
Sed11g0026 353 SMART c3hfinal6 160 183 IPR000571 GO:0046872(InterPro)
Sed11g0026 353 PANTHER UNKEMPT FAMILY MEMBER 51 349 IPR045234 -
Sed11g0026 353 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872(InterPro)
Sed11g0026 353 FunFam Zinc finger CCCH domain-containing protein 66 83 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0026 Sed-Chr11:181821 Sed12g1796 Sed-Chr12:29019216 2.10E-97 dispersed
Sed11g0026 Sed-Chr11:181821 Sed03g1772 Sed-Chr3:11706287 8.10E-134 wgd
Sed11g0026 Sed-Chr11:181821 Sed08g0848 Sed-Chr8:6886229 1.00E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39874 PF00642 zf-CCCH 6.80E-05 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0026 - - - 0.0