Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0026 | ATGGCAGAAATGGTGATCGGCGATAAACCAAACCGCCCTAACCAGACGCTTCTCATTCCTCCATGGACGTTTATGGATGATCCGCCGTCGGATGTGTGCAGTTATTCTCCGGGAAGCGGCGGAGGTGGATTCTCTCCCTACGCCATTCCGGACAAAAACGCCTTGTTGCAGCAGTATTTTCTCTGGAAAGAAGCGGAGATGGAGTCGGAATTTGATGTTTCAGGGCGGGAGTTGGATGCCTACTCCACCGATAAGTTCCGAATGTATGAGTTCAAGATCAAGAAGTGCACGAGAGGAAGATCGCACGATTGGACGGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCGCGGCGGCGAGATCCGAAGAGGTATTACTATTCCGGTACGGCGTGTGCGGAGTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTTCGCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTACCGGACTCAGCCGTGCAAGGACGGGACTAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGGCGGAGCAGCTTCGGGTTTTGCCTCAGCAGAGTCCAAAGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGCCAAGCGTTTGAGGCCTGTGCGAAACAAATCTCGTATTTATCTTCGCCGGGAACATCGCCGCCGTTTTCGCCTCCAATCGAGTCTCCGCCTCAATCGCCGATGATCAGATCGTTGAATCGGCCGATTTTACAGATCGGTAAGGTAGTACAATCGCCTTCTTCTTCTCCGTGGAATGTTTCTGTATTCGGATGTCCAGATGAATCCACCACCGGATCCGGTTTCTGCAGCCTTCCAGATACTCCGACTCGTCCAACCAGCCGATTTCTCGACTTGTGGGAGCTAGGTTCCGGCGAGGGACCGGCAATGGAGCGAGTCGAGTCCGGGAGAGATCTACGAGCGAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGATAAATACGATTGGGTCTCGGAGCTGCTTGGCGGTGGTAATTAA | 1062 | 53.77 | MAEMVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLWKEAEMESEFDVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSPPIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVGCGDQDKYDWVSELLGGGN | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 181821 | 183289 | - | Sed0003406.1 | Sed11g0026 | 728672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0026 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 130 | 150 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0026 | 353 | Gene3D | - | 122 | 196 | - | - | |
Sed11g0026 | 353 | SMART | c3hfinal6 | 125 | 151 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0026 | 353 | SMART | c3hfinal6 | 160 | 183 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0026 | 353 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 349 | IPR045234 | - | |
Sed11g0026 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 125 | 152 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0026 | 353 | FunFam | Zinc finger CCCH domain-containing protein 66 | 83 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0026 | Sed-Chr11:181821 | Sed12g1796 | Sed-Chr12:29019216 | 2.10E-97 | dispersed | |
Sed11g0026 | Sed-Chr11:181821 | Sed03g1772 | Sed-Chr3:11706287 | 8.10E-134 | wgd | |
Sed11g0026 | Sed-Chr11:181821 | Sed08g0848 | Sed-Chr8:6886229 | 1.00E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39874 | PF00642 | zf-CCCH | 6.80E-05 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0026 | - | - | - | 0.0 |