Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0035 ATGTCGTGGCAAACTTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCTTCTGCCATTGTCGGTCACGATGGCAGCATCTGGGCTCAGAGCTCCGCATTTCCTCAGTTCAAGCCTGAGGAGATTACTGGTATCATGAAGGATTTTGATGAGCCAGGGCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTCATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAAACTGGTCAAGCTCTAGTTTTTGGTCTCTATGAAGAGCCTGTTACTCCGGGACAGTGCAACATGGTTGTCGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.0 MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSIWAQSSAFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 334700 336805 + Sed0025812.1 Sed11g0035 728681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0035 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Sed11g0035 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed11g0035 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Sed11g0035 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed11g0035 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 FunFam Profilin 1 133 - -
Sed11g0035 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0035 K05759 - - csv:101219322 257.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1754 Sed-Chr3:11589063 Sed11g0035 Sed-Chr11:334700 1.60E-74 dispersed
Sed06g2183 Sed-Chr6:45612222 Sed11g0035 Sed-Chr11:334700 2.10E-58 dispersed
Sed07g1414 Sed-Chr7:10840870 Sed11g0035 Sed-Chr11:334700 2.20E-60 dispersed
Sed11g0035 Sed-Chr11:334700 Sed11g0036 Sed-Chr11:338165 3.80E-60 tandem
Sed11g0035 Sed-Chr11:334700 Sed03g1753 Sed-Chr3:11584945 1.60E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g251 . . . . Bpe01g00568 Bpe02g02225 . Bma11g00549 . . . . Car05g01289 . . . . . . . . . . . . . . . . . . . . Cone4ag0756 . . Csa02g00079 Chy05g01410 . Blo08g00324 . Bda02g00405 . Bpe08g00505 . . . Sed11g0035 Cmo05g01378 . . . . . Cpe11g01145 . Bhi06g01686 Tan08g0107 Cmetu05g1788 . Hepe08g2631 . . . . . . . . . Lsi11g00216 . . Cme05g02014
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 9.4e-213 736.9
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.2e-212 736.5
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 1.2e-212 736.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.6e-212 736.1
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.1e-212 735.7
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.6e-212 734.9
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 6.1e-212 734.2
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 8.0e-212 733.8
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT2G37620 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT2G37620 99.2 8.9e-70 261.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 6.5e-214 740.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.9e-213 739.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.2e-213 738.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 736.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 2.7e-212 735.3
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G59370 95.5 6.1e-212 734.2
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 4.4e-210 728.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-209 726.5
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G59370 92.1 2.5e-80 297.0
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G59370 97.6 4.4e-69 259.6
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.9e-214 741.9
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 8.5e-214 740.3
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.2e-213 737.3
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-212 736.5
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 2.7e-212 735.3
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.0e-210 729.2
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.7e-210 727.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 7.5e-210 727.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G46520 92.7 1.1e-80 298.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G46520 97.6 4.4e-69 259.6
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 7.7e-215 743.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 743.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.1e-213 740.0
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 738.4
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 4.2e-213 738.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 735.7
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.7e-212 735.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 4.7e-212 734.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 6.1e-212 734.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G12110 90.9 5.6e-80 295.8
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G12110 98.4 2.0e-69 260.8
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-208 722.2
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.1e-208 721.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 9.1e-208 720.3
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 719.5
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.7e-207 718.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 4.5e-207 718.0
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.0e-206 716.8
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.7e-206 716.1
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G18780 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G18780 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 8.3e-209 723.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.4e-208 723.0
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 3.1e-208 721.8
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.1e-208 721.5
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 721.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 9.1e-208 720.3
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.6e-207 719.5
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.5e-207 718.4
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 5.9e-207 717.6
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT1G49240 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT1G49240 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 4.1e-216 748.0
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 6.5e-214 740.7
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 1.5e-213 739.6
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.6e-212 736.1
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.1e-212 735.7
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 3.6e-212 734.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 6.1e-212 734.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.2e-211 731.1
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G09810 94.4 3.4e-210 728.4
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G09810 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G09810 98.4 2.6e-69 260.4
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT2G19760 80.2 2.2e-60 229.2
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 4.6e-58 221.5
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.3e-55 213.4
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 9.1e-54 207.2
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 7.7e-53 204.1
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.5e-59 224.6
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.0e-57 218.8
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 4.8e-55 211.5
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 5.3e-54 208.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.2e-52 202.6
Sed11g0036 . 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 152.1
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 9.0e-57 217.2
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 1.2e-56 216.9
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29340 72.4 1.7e-55 213.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 7.9e-53 204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112