Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0035 ATGTCGTGGCAAACTTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCTTCTGCCATTGTCGGTCACGATGGCAGCATCTGGGCTCAGAGCTCCGCATTTCCTCAGTTCAAGCCTGAGGAGATTACTGGTATCATGAAGGATTTTGATGAGCCAGGGCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTCATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAAACTGGTCAAGCTCTAGTTTTTGGTCTCTATGAAGAGCCTGTTACTCCGGGACAGTGCAACATGGTTGTCGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.0 MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSIWAQSSAFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 334700 336805 + Sed0025812.1 Sed11g0035 728681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0035 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Sed11g0035 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed11g0035 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Sed11g0035 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed11g0035 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 FunFam Profilin 1 133 - -
Sed11g0035 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Sed11g0035 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1754 Sed-Chr3:11589063 Sed11g0035 Sed-Chr11:334700 1.60E-74 dispersed
Sed06g2183 Sed-Chr6:45612222 Sed11g0035 Sed-Chr11:334700 2.10E-58 dispersed
Sed07g1414 Sed-Chr7:10840870 Sed11g0035 Sed-Chr11:334700 2.20E-60 dispersed
Sed11g0035 Sed-Chr11:334700 Sed11g0036 Sed-Chr11:338165 3.80E-60 tandem
Sed11g0035 Sed-Chr11:334700 Sed03g1753 Sed-Chr3:11584945 1.60E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0035 K05759 - csv:101219322 257.299