Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0036 ATGTCGTGGCAAGTTTACGTTGATGATCATCTGATGTGCGAAATCGAGGGAAATCACCTCACATCGGCGGCCATTATCGGCCACGACGGCAGCGTTTGGGCTCAAAGCGCCAATTTCCCTCAGCTTAAGCCTGAAGAAATTACTGGCATCATGAATGACTTCAATGAACCAGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGTTAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTATTAAGAAGACTTCTCTGGCACTAGTCATTGGCATCTATGATGAACCCATGGCTCCTGGTCAGTGCAATATGATTGTGGAAAGGCTTGGGGATTATCTCGTCGATCAGGGTCTCTAA 396 48.48 MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSANFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGVKYMVIQGEPGAVIRGKKGPGGVTIKKTSLALVIGIYDEPMAPGQCNMIVERLGDYLVDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 338165 340083 + Sed0015249.1 Sed11g0036 728682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0036 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Sed11g0036 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed11g0036 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed11g0036 131 FunFam Profilin 1 131 - -
Sed11g0036 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Sed11g0036 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Sed11g0036 131 Pfam Profilin 1 130 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1753 Sed-Chr3:11584945 Sed11g0036 Sed-Chr11:338165 1.30E-65 dispersed
Sed11g0035 Sed-Chr11:334700 Sed11g0036 Sed-Chr11:338165 3.80E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0036 K05759 - cit:102628130 259.996