Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed11g0036	ATGTCGTGGCAAGTTTACGTTGATGATCATCTGATGTGCGAAATCGAGGGAAATCACCTCACATCGGCGGCCATTATCGGCCACGACGGCAGCGTTTGGGCTCAAAGCGCCAATTTCCCTCAGCTTAAGCCTGAAGAAATTACTGGCATCATGAATGACTTCAATGAACCAGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGTTAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTATTAAGAAGACTTCTCTGGCACTAGTCATTGGCATCTATGATGAACCCATGGCTCCTGGTCAGTGCAATATGATTGTGGAAAGGCTTGGGGATTATCTCGTCGATCAGGGTCTCTAA	396	48.48	MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSANFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGVKYMVIQGEPGAVIRGKKGPGGVTIKKTSLALVIGIYDEPMAPGQCNMIVERLGDYLVDQGL	131

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	338165	340083	+	Sed0015249.1	Sed11g0036	728682

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sed11g0036	131	PRINTS	Profilin signature	3	12	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Profilin signature	21	30	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Profilin signature	100	113	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Profilin signature	113	130	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Profilin signature	40	60	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Profilin signature	64	78	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	SUPERFAMILY	Profilin (actin-binding protein)	2	130	IPR036140	-
Sed11g0036	131	CDD	PROF	2	130	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	ProSitePatterns	Profilin signature.	1	8	IPR027310	GO:0003779(InterPro)
Sed11g0036	131	SMART	prof_2	1	131	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PANTHER	PROFILIN	1	130	IPR005455	GO:0003779(InterPro)\|GO:0003785(PANTHER)\|GO:0005938(PANTHER)\|GO:0042989(PANTHER)
Sed11g0036	131	FunFam	Profilin	1	131	-	-
Sed11g0036	131	Gene3D	Dynein light chain 2a, cytoplasmic	1	131	-	-
Sed11g0036	131	PRINTS	Plant profilin signature	52	66	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	27	40	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	1	14	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	84	99	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	104	117	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	117	130	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	PRINTS	Plant profilin signature	71	80	IPR005455	GO:0003779(InterPro)
Sed11g0036	131	Pfam	Profilin	1	130	IPR048278	GO:0003779(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed11g0036	K05759	-	-	cit:102628130	259.996

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed03g1753	Sed-Chr3:11584945	Sed11g0036	Sed-Chr11:338165	1.30E-65	dispersed
	Sed11g0035	Sed-Chr11:334700	Sed11g0036	Sed-Chr11:338165	3.80E-60	tandem

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi11g252	.	Blo16g01002	Bda01g02037	Bda11g01079	.	.	.	Bma11g00546	.	.	Cma05g01374	.	Car05g01288	.	.	.	.	.	.	.	.	.	.	.	Cla11g00182	Cam11g0212	Cec11g0213	Cco11g0226	Clacu11g0347	Cmu11g0197	Cre11g0695	.	.	Cone4ag0755	.	.	Csa02g00080	Chy05g01409	.	.	Blo14g00527	.	Bda09g01121	.	Bpe13g01272	Bma01g00212	Bma06g00836	Sed11g0036	Cmo05g01377	Cmo12g01309	.	.	.	.	Cpe11g01144	Cpe07g01035	Bhi06g01687	Tan08g0108	Cmetu05g1709	.	.	.	.	.	.	.	.	.	.	.	Lsi11g00217	.	.	Cme05g02013

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	1.9e-213	739.2
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.2e-213	738.4
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.2e-213	738.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	4.2e-213	738.0
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	4.2e-213	738.0
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	9.4e-213	736.9
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT2G37620	94.7	1.2e-212	736.5
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	1.2e-212	736.5
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	1.6e-212	736.1
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	2.1e-212	735.7
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT2G37620	94.4	3.6e-212	734.9
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	6.1e-212	734.2
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	8.0e-212	733.8
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT2G37620	90.2	3.6e-79	293.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT2G37620	99.2	8.9e-70	261.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	6.5e-214	740.7
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	1.9e-213	739.2
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	4.2e-213	738.0
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	9.4e-213	736.9
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	9.4e-213	736.9
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	1.6e-212	736.1
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.0	2.7e-212	735.3
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT5G59370	95.5	6.1e-212	734.2
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.7	2.6e-210	728.8
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.2	4.4e-210	728.0
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	5.7e-210	727.6
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	5.7e-210	727.6
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT5G59370	93.9	1.3e-209	726.5
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT5G59370	92.1	2.5e-80	297.0
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT5G59370	97.6	4.4e-69	259.6
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	2.9e-214	741.9
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	8.5e-214	740.3
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	1.9e-213	739.2
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	4.2e-213	738.0
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	4.2e-213	738.0
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	7.2e-213	737.3
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.3	1.2e-212	736.5
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G46520	95.8	2.7e-212	735.3
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	2.0e-210	729.2
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.6e-210	728.8
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.6e-210	728.8
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.2	5.7e-210	727.6
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	7.5e-210	727.2
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G46520	92.7	1.1e-80	298.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G46520	97.6	4.4e-69	259.6
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G12110	97.1	7.7e-215	743.8
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.3e-214	743.0
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.7e-214	742.7
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.7e-214	742.7
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	1.1e-213	740.0
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.8	3.2e-213	738.4
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	4.2e-213	738.0
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.6e-212	736.1
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.6e-212	736.1
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	2.1e-212	735.7
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.8	2.7e-212	735.3
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	4.7e-212	734.6
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.0	6.1e-212	734.2
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G12110	90.9	5.6e-80	295.8
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G12110	98.4	2.0e-69	260.8
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	8.3e-209	723.8
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	8.3e-209	723.8
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.8	2.4e-208	722.2
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	4.1e-208	721.5
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.8	9.1e-208	720.3
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.1e-208	720.3
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.1e-208	720.3
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.2e-207	719.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	1.6e-207	719.5
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.8	2.7e-207	718.8
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	4.5e-207	718.0
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.2	1.0e-206	716.8
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.2	1.7e-206	716.1
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G18780	87.8	1.4e-78	291.2
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G18780	94.5	8.3e-68	255.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.8e-209	725.3
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.8e-209	725.3
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.1	8.3e-209	723.8
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	1.4e-208	723.0
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	3.1e-208	721.8
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	3.1e-208	721.8
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	3.1e-208	721.8
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	4.1e-208	721.5
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	5.3e-208	721.1
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	9.1e-208	720.3
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	1.6e-207	719.5
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.5	3.5e-207	718.4
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.5	5.9e-207	717.6
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT1G49240	87.8	1.4e-78	291.2
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT1G49240	94.5	8.3e-68	255.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.4e-216	749.6
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.4e-216	749.6
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.1	4.1e-216	748.0
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.3	6.5e-214	740.7
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	1.5e-213	739.6
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.2e-212	736.5
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.2e-212	736.5
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.6e-212	736.1
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	2.1e-212	735.7
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.5	3.6e-212	734.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.2	6.1e-212	734.2
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.2	5.2e-211	731.1
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT5G09810	94.4	3.4e-210	728.4
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT5G09810	90.2	3.6e-79	293.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT5G09810	98.4	2.6e-69	260.4
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT2G19760	80.2	2.2e-60	229.2
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT2G19760	78.6	4.6e-58	221.5
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT2G19760	75.2	7.4e-56	214.2
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT2G19760	75.2	1.3e-55	213.4
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT2G19760	71.8	9.1e-54	207.2
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT2G19760	71.8	7.7e-53	204.1
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT4G29350	78.6	5.5e-59	224.6
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT4G29350	78.6	3.0e-57	218.8
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT4G29350	75.2	7.4e-56	214.2
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT4G29350	73.7	4.8e-55	211.5
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT4G29350	73.3	5.3e-54	208.0
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT4G29350	71.0	2.2e-52	202.6
Sed11g0036	.	1	87	Cytoskeleton Gene Families	AT5G56600	79.3	2.9e-37	152.1
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT4G29340	82.8	2.2e-63	239.2
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT4G29340	82.8	2.2e-63	239.2
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT4G29340	73.9	9.0e-57	217.2
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT4G29340	74.6	1.2e-56	216.9
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT4G29340	72.4	1.7e-55	213.0
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT4G29340	70.1	7.9e-53	204.1

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000501	4	6	1	4	4	2	6	4	2	3	2	1	3	3	3	6	2	7	7	3	3	3	2	4	5	5	3	6	4	4	112