Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0045 ATGGGAGAAGAAGATTCTGCTGGTGCGAATCAGAAGAAGGCTCAATCAGATGGTGCAGCGATGAGTAATTCTTCGTCGTCGGATATTCCGTCGAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCGCAATCGCATTCGAACTCGCCGGCTCCATTAGTTGCTCAGAATCTTCAGCAAGCTCAGCTGAAGCCACAGTCGCAGATCGCGGCGGCATCAGTCGCACCTTTGGCGCCTCATTCGTCTGTAAGAGCTGTGAAGCCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGAGTGTACTCCTAAGAAGCAAAAACAGTGTAACTGCAAACATTCACGTTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTCGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAACAGGGAGGAGGCCGGAGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCGGACAATTGTAAGTGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAATAATATGTCATTCATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAAGTCAAGAACTCTACTTTGGACCCACAGCCAAGGACCTATCCACTCATAGACCAGTGACATTTCAACAGGCAAATCATGTCAGAGCCGCAGCTCCTCCGCTACCATCCTTTCCCATTGCTGGTGTAGGAAGCCCGTCATTGTTGGGTCCCTCGAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTATTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGAACAAACAAATGGTACTGAAAAGCAAGCTGATTGTCAAACAGAAACTTCTGTTGCATCATCCACACAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCGGATGATCGTTCAAGCGCAAATCAGGCTGGTAAAACCACCCCCGATGATTCTAATTCAGATGGCGGCGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAGTGGGTCCTGGCTGCAGCACTTCATCACAACTGCCCCACAGACAAGACATGTCTGAGGTCTATGCGGAGCAGGAGAGGATCGTTCTGACGAAGTTTCGGGACTGTCTCAATAGACTTATCACTTTGGGAGAAATAAAAGAGTCACAGTGTTCCTCTTTGGCCAGAAGTGAAGTAGTCAATCAAGAACACCAACTCAACAATGGCACTACAAACTCTAGAACTGAGACTCAAACTAATTCCGAGCAACTCAACAATAAAGTTACGAAATCTTCGATTCCACTGTCGGGGAAGACAGCGCAGACAGCAACTGCACCGGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTATCTTGA 1758 46.36 MGEEDSAGANQKKAQSDGAAMSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSPAPLVAQNLQQAQLKPQSQIAAASVAPLAPHSSVRAVKPESPMSRARPAVEAKECTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNMSFIQQAANAAITGAIGSSGYASPPVSKKRKSQELYFGPTAKDLSTHRPVTFQQANHVRAAAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQEQTNGTEKQADCQTETSVASSTQDRLQKKDASDEKAAADDRSSANQAGKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLVGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKESQCSSLARSEVVNQEHQLNNGTTNSRTETQTNSEQLNNKVTKSSIPLSGKTAQTATAPVMTLSNDQRQKVLPLS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 431062 436803 - Sed0004736.1 Sed11g0045 728691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0045 585 SMART CXC_2 198 239 IPR033467 -
Sed11g0045 585 SMART CXC_2 113 153 IPR033467 -
Sed11g0045 585 MobiDBLite consensus disorder prediction 371 444 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 371 396 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 525 585 - -
Sed11g0045 585 PANTHER TESMIN/TSO1-RELATED 19 514 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed11g0045 585 MobiDBLite consensus disorder prediction 81 106 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 397 411 - -
Sed11g0045 585 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Sed11g0045 585 MobiDBLite consensus disorder prediction 414 428 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 1 57 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 9 32 - -
Sed11g0045 585 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Sed11g0045 585 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0045 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0045 Sed-Chr11:431062 Sed12g0953 Sed-Chr12:5950731 8.20E-30 dispersed
Sed11g0045 Sed-Chr11:431062 Sed11g0046 Sed-Chr11:431062 6.70E-234 tandem
Sed11g0045 Sed-Chr11:431062 Sed08g0784 Sed-Chr8:6039014 1.20E-169 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0956 . 306 620 CPP Transcription Factor Family AT3G22760 53.6 3.5e-87 320.1
Sed12g0955 . 306 593 CPP Transcription Factor Family AT3G22760 51.0 1.6e-71 268.1
Sed11g0045 . 31 515 CPP Transcription Factor Family AT2G20110 56.5 1.6e-141 500.7
Sed08g0784 . 29 504 CPP Transcription Factor Family AT2G20110 53.6 7.9e-128 455.3
Sed11g0046 . 31 395 CPP Transcription Factor Family AT2G20110 58.0 7.2e-113 405.6
Sed11g0046 . 105 379 CPP Transcription Factor Family AT5G25790 50.9 5.0e-75 279.6
Sed11g0045 . 29 522 CPP Transcription Factor Family AT4G29000 57.2 2.1e-153 540.4
Sed08g0784 . 23 527 CPP Transcription Factor Family AT4G29000 53.8 6.9e-141 498.8
Sed11g0046 . 29 417 CPP Transcription Factor Family AT4G29000 55.8 8.8e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39876 PF03638 TCR 2.80E-12 No_clan Sed TF