Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0045 ATGGGAGAAGAAGATTCTGCTGGTGCGAATCAGAAGAAGGCTCAATCAGATGGTGCAGCGATGAGTAATTCTTCGTCGTCGGATATTCCGTCGAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCGCAATCGCATTCGAACTCGCCGGCTCCATTAGTTGCTCAGAATCTTCAGCAAGCTCAGCTGAAGCCACAGTCGCAGATCGCGGCGGCATCAGTCGCACCTTTGGCGCCTCATTCGTCTGTAAGAGCTGTGAAGCCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGAGTGTACTCCTAAGAAGCAAAAACAGTGTAACTGCAAACATTCACGTTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTCGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAACAGGGAGGAGGCCGGAGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCGGACAATTGTAAGTGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAATAATATGTCATTCATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAAGTCAAGAACTCTACTTTGGACCCACAGCCAAGGACCTATCCACTCATAGACCAGTGACATTTCAACAGGCAAATCATGTCAGAGCCGCAGCTCCTCCGCTACCATCCTTTCCCATTGCTGGTGTAGGAAGCCCGTCATTGTTGGGTCCCTCGAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTATTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGAACAAACAAATGGTACTGAAAAGCAAGCTGATTGTCAAACAGAAACTTCTGTTGCATCATCCACACAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCGGATGATCGTTCAAGCGCAAATCAGGCTGGTAAAACCACCCCCGATGATTCTAATTCAGATGGCGGCGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAGTGGGTCCTGGCTGCAGCACTTCATCACAACTGCCCCACAGACAAGACATGTCTGAGGTCTATGCGGAGCAGGAGAGGATCGTTCTGACGAAGTTTCGGGACTGTCTCAATAGACTTATCACTTTGGGAGAAATAAAAGAGTCACAGTGTTCCTCTTTGGCCAGAAGTGAAGTAGTCAATCAAGAACACCAACTCAACAATGGCACTACAAACTCTAGAACTGAGACTCAAACTAATTCCGAGCAACTCAACAATAAAGTTACGAAATCTTCGATTCCACTGTCGGGGAAGACAGCGCAGACAGCAACTGCACCGGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTATCTTGA 1758 46.36 MGEEDSAGANQKKAQSDGAAMSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSPAPLVAQNLQQAQLKPQSQIAAASVAPLAPHSSVRAVKPESPMSRARPAVEAKECTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNMSFIQQAANAAITGAIGSSGYASPPVSKKRKSQELYFGPTAKDLSTHRPVTFQQANHVRAAAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQEQTNGTEKQADCQTETSVASSTQDRLQKKDASDEKAAADDRSSANQAGKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLVGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKESQCSSLARSEVVNQEHQLNNGTTNSRTETQTNSEQLNNKVTKSSIPLSGKTAQTATAPVMTLSNDQRQKVLPLS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 431062 436803 - Sed0004736.1 Sed11g0045 728691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0045 585 SMART CXC_2 198 239 IPR033467 -
Sed11g0045 585 SMART CXC_2 113 153 IPR033467 -
Sed11g0045 585 MobiDBLite consensus disorder prediction 371 444 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 371 396 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 525 585 - -
Sed11g0045 585 PANTHER TESMIN/TSO1-RELATED 19 514 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed11g0045 585 MobiDBLite consensus disorder prediction 81 106 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 397 411 - -
Sed11g0045 585 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Sed11g0045 585 MobiDBLite consensus disorder prediction 414 428 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 1 57 - -
Sed11g0045 585 MobiDBLite consensus disorder prediction 9 32 - -
Sed11g0045 585 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Sed11g0045 585 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0045 Sed-Chr11:431062 Sed12g0953 Sed-Chr12:5950731 8.20E-30 dispersed
Sed11g0045 Sed-Chr11:431062 Sed11g0046 Sed-Chr11:431062 6.70E-234 tandem
Sed11g0045 Sed-Chr11:431062 Sed08g0784 Sed-Chr8:6039014 1.20E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39876 PF03638 TCR 2.80E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0045 - - - 0.0