Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0046 ATGGGAGAAGAAGATTCTGCTGGTGCGAATCAGAAGAAGGCTCAATCAGATGGTGCAGCGATGAGTAATTCTTCGTCGTCGGATATTCCGTCGAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCGCAATCGCATTCGAACTCGCCGGCTCCATTAGTTGCTCAGAATCTTCAGCAAGCTCAGCTGAAGCCACAGTCGCAGATCGCGGCGGCATCAGTCGCACCTTTGGCGCCTCATTCGTCTGTAAGAGCTGTGAAGCCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGAGTGTACTCCTAAGAAGCAAAAACAGTGTAACTGCAAACATTCACGTTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTCGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAACAGGGAGGAGGCCGGAGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCGGACAATTGTAAGTGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAATAATATGTCATTCATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAAGTCAAGAACTCTACTTTGGACCCACAGCCAAGGACCTATCCACTCATAGACCAGTGACATTTCAACAGGCAAATCATGTCAGAGCCGCAGCTCCTCCGCTACCATCCTTTCCCATTGCTGGTGTAGGAAGCCCGTCATTGTTGGGTCCCTCGAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTATTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGAACAAACAAATGGTACTGAAAAGCAAGCTGATTGTCAAACAGAAACTTCTGTTGCATCATCCACACAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCGGATGATCGTTCAAGCGCAAATCAGGCTGATTAG 1260 45.79 MGEEDSAGANQKKAQSDGAAMSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSPAPLVAQNLQQAQLKPQSQIAAASVAPLAPHSSVRAVKPESPMSRARPAVEAKECTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNMSFIQQAANAAITGAIGSSGYASPPVSKKRKSQELYFGPTAKDLSTHRPVTFQQANHVRAAAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQEQTNGTEKQADCQTETSVASSTQDRLQKKDASDEKAAADDRSSANQAD 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 431062 436803 - Sed0004736.2 Sed11g0046 728692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0046 419 SMART CXC_2 198 239 IPR033467 -
Sed11g0046 419 SMART CXC_2 113 153 IPR033467 -
Sed11g0046 419 MobiDBLite consensus disorder prediction 397 412 - -
Sed11g0046 419 MobiDBLite consensus disorder prediction 371 396 - -
Sed11g0046 419 PANTHER TESMIN/TSO1-RELATED 19 377 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed11g0046 419 MobiDBLite consensus disorder prediction 371 419 - -
Sed11g0046 419 MobiDBLite consensus disorder prediction 81 106 - -
Sed11g0046 419 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Sed11g0046 419 MobiDBLite consensus disorder prediction 1 57 - -
Sed11g0046 419 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Sed11g0046 419 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Sed11g0046 419 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0784 Sed-Chr8:6039014 Sed11g0046 Sed-Chr11:431062 2.10E-139 dispersed
Sed11g0046 Sed-Chr11:431062 Sed12g0953 Sed-Chr12:5950731 5.80E-30 dispersed
Sed11g0045 Sed-Chr11:431062 Sed11g0046 Sed-Chr11:431062 6.70E-234 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39877 PF03638 TCR 1.90E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0046 - - - 0.0