Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0054 | ATGGTGGACGCCACCGTGCCAGAGACCGACTCGGGTGGCGCCAATTCCTCGTCCTCATCCTCCTCCTATCTCTCGCCTTCATGTTCCATCTCGTCTCCCCCAAAACAAGGCAATACCATGCACAAGGGAAGGCGTGAAGAAATCAGCAGCAACAACAATCCACACCCAATTTACCGCGGTGTTCGAAAGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAACCCAAGAAGAAGAGTCGGATTTGGTTGGGTACCTTCGCAACGCCTGAAATGGCGGCGCGTGCCCATGACGTGGCTGCCCTTACCATCAAAGGCAACTCTGCCATCCTCAATTTCCCCGAACTCGCCGCCTCATTCCCCCGCCCCGCCTCATCCTCCCCCCGCGATGTACAATCTGCTGCCGCTTTGGCTGCCTCAATGCAACTCCCTAATATCCCTTCTCTGCCACCGCCATTTTCGTCATCGATCGAATTGGACGAGTCAACGCCCGAGGAGCTGAGTGAAATCGTGGAGCTGCCGAGTTTGGGGACCAGTTACGAGGAATCGACCGAGTTCGTGTGCGACGAGTGGTTGTATACTTATGGGCCGTGGTATCAAAATCAAAGCACCAGGGAAGAAAAAGAAGAAGCTTATGAATACTTTAGAGATCAAATCACAATGGTGGAACCAGAGTGTTTGATTCAACCTTTACCTTTCTCGTGGTAA | 708 | 53.11 | MVDATVPETDSGGANSSSSSSSYLSPSCSISSPPKQGNTMHKGRREEISSNNNPHPIYRGVRKRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNIPSLPPPFSSSIELDESTPEELSEIVELPSLGTSYEESTEFVCDEWLYTYGPWYQNQSTREEKEEAYEYFRDQITMVEPECLIQPLPFSW | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 512499 | 513559 | + | Sed0007458.1 | Sed11g0054 | 728700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0054 | 235 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 32 | 182 | IPR051032 | - | |
Sed11g0054 | 235 | PRINTS | Ethylene responsive element binding protein signature | 58 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | PRINTS | Ethylene responsive element binding protein signature | 80 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | FunFam | Ethylene-responsive transcription factor 2 | 56 | 115 | - | - | |
Sed11g0054 | 235 | CDD | AP2 | 56 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | SMART | rav1_2 | 57 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Sed11g0054 | 235 | MobiDBLite | consensus disorder prediction | 9 | 38 | - | - | |
Sed11g0054 | 235 | Pfam | AP2 domain | 57 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | Gene3D | AP2/ERF domain | 57 | 115 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0054 | 235 | SUPERFAMILY | DNA-binding domain | 57 | 115 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1738 | Sed-Chr3:11404912 | Sed11g0054 | Sed-Chr11:512499 | 3.10E-58 | dispersed | |
Sed08g0804 | Sed-Chr8:6325078 | Sed11g0054 | Sed-Chr11:512499 | 2.90E-50 | dispersed | |
Sed10g1609 | Sed-Chr10:32648229 | Sed11g0054 | Sed-Chr11:512499 | 3.60E-24 | dispersed | |
Sed11g0054 | Sed-Chr11:512499 | Sed12g1829 | Sed-Chr12:29557891 | 8.60E-47 | dispersed | |
Sed11g0054 | Sed-Chr11:512499 | Sed03g1737 | Sed-Chr3:11366227 | 8.30E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39878 | PF00847 | AP2 | 3.90E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0054 | K09286 | - | csv:101212945 | 304.679 |