Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0054 ATGGTGGACGCCACCGTGCCAGAGACCGACTCGGGTGGCGCCAATTCCTCGTCCTCATCCTCCTCCTATCTCTCGCCTTCATGTTCCATCTCGTCTCCCCCAAAACAAGGCAATACCATGCACAAGGGAAGGCGTGAAGAAATCAGCAGCAACAACAATCCACACCCAATTTACCGCGGTGTTCGAAAGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAACCCAAGAAGAAGAGTCGGATTTGGTTGGGTACCTTCGCAACGCCTGAAATGGCGGCGCGTGCCCATGACGTGGCTGCCCTTACCATCAAAGGCAACTCTGCCATCCTCAATTTCCCCGAACTCGCCGCCTCATTCCCCCGCCCCGCCTCATCCTCCCCCCGCGATGTACAATCTGCTGCCGCTTTGGCTGCCTCAATGCAACTCCCTAATATCCCTTCTCTGCCACCGCCATTTTCGTCATCGATCGAATTGGACGAGTCAACGCCCGAGGAGCTGAGTGAAATCGTGGAGCTGCCGAGTTTGGGGACCAGTTACGAGGAATCGACCGAGTTCGTGTGCGACGAGTGGTTGTATACTTATGGGCCGTGGTATCAAAATCAAAGCACCAGGGAAGAAAAAGAAGAAGCTTATGAATACTTTAGAGATCAAATCACAATGGTGGAACCAGAGTGTTTGATTCAACCTTTACCTTTCTCGTGGTAA 708 53.11 MVDATVPETDSGGANSSSSSSSYLSPSCSISSPPKQGNTMHKGRREEISSNNNPHPIYRGVRKRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNIPSLPPPFSSSIELDESTPEELSEIVELPSLGTSYEESTEFVCDEWLYTYGPWYQNQSTREEKEEAYEYFRDQITMVEPECLIQPLPFSW 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 512499 513559 + Sed0007458.1 Sed11g0054 728700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0054 235 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 182 IPR051032 -
Sed11g0054 235 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Sed11g0054 235 CDD AP2 56 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 SMART rav1_2 57 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 MobiDBLite consensus disorder prediction 1 57 - -
Sed11g0054 235 MobiDBLite consensus disorder prediction 9 38 - -
Sed11g0054 235 Pfam AP2 domain 57 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0054 235 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1738 Sed-Chr3:11404912 Sed11g0054 Sed-Chr11:512499 3.10E-58 dispersed
Sed08g0804 Sed-Chr8:6325078 Sed11g0054 Sed-Chr11:512499 2.90E-50 dispersed
Sed10g1609 Sed-Chr10:32648229 Sed11g0054 Sed-Chr11:512499 3.60E-24 dispersed
Sed11g0054 Sed-Chr11:512499 Sed12g1829 Sed-Chr12:29557891 8.60E-47 dispersed
Sed11g0054 Sed-Chr11:512499 Sed03g1737 Sed-Chr3:11366227 8.30E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39878 PF00847 AP2 3.90E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0054 K09286 - csv:101212945 304.679