Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0064 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCGCCGCCCCCCGTAACCCCCAGTGCTCCGCCTCCGGCATCCACATCTCCGCCTTCCGCTGCAACGCCGCCGTCATTCCCGTCCTCTCCACCGCCCATAGACTCTCCCTCGCCGCCGTCGCCGCCGTCTACTCCCTCAATTTCTCCGCCTCCCCCGGTCGGCCACAGTCCTCGTACGCCGTCGAGAAGTCATCCAACTCCATCAACGCCGTCGACATCGCCGCCGGATTCCGCCTCCTCGTCCAATATTTCGACCGGAGTTGTGGTCGGAATTGCAATCGGAGGAGTGGTAATCATTTTTGTGGTGAGTATATTGTTTCTTTGTTGTACAAAGAAGAAGAGAAGACGACGTGATGAAGAAGGATTCTATCAATTCGGTCCTAAAGTTGATCCTTATGGGGGTCAGCAGCAATGGCAGCACAATGCTCCTCTGCCTCCTGATCCAATAATTGGGATGGTGCCTAAGCCATCTCCTCCTCCTCCTCCACCAGTTGCATCCCGACCCCTACCTCCGCAGCCCTATACGACTAGCAGTGGAGGTTCAGGCTCTATGTATTCAGGGCCCGAAAATCCGCTCCCTCCACCGCCTCCGCCTCATATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAGTTAGCAATGGCGACCGATGGCTTTTCGGATGCCAATCTCCTGGGACAAGGCGGATTCGGTTATGTCCATAAAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTTAAGCAGTTGAAAGCTGGGAGTGGACAGGGCGAACGAGAATTTCAGGCTGAAGTCGATACCATCAGCCGAGTTCATCACAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCCAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATCGCTTTAGGATCAGCAAAAGGACTGGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCCTCTAACATACTGTTGAATTTCAAGTTTGAAGCAGAGGTTGCTGATTTTGGACTTGCAAAGTTTTCATCGGATGGCAATACCCATGTATCGACCCGAGTTATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGAAAAATCAGATGTCTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGGCCAGTCGATACGAGTAACACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCGTTGTTGAACCAAGCTTTAGAAGATGGAAACTTCGACGATTTGATCGATCCAAGGATTCAGAACAACTACAACCACTATGAGATAGCTCGTATGGTTGAGTGTGCTGCTGCCTGTGTGCAACATTCAGCAAGGCGTCGACCCCGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACGCATCGCTATTGGATCTCAATGAAGGAGTCAGACCCGGACAGAGCACAATGTACAGCTCGCATGGAAGTTTAGACTACGACACCCACCAGTACAATCAGAACTTGAAGAAGTTCAAGAAGATGGCACTCGGTAGCACGGAGTATGGAGCGAGCAGCAAGTACAGCGCACCGACAAGCGAGTACGGGCTATACCCATCGGGGTCTAGCAGCGAAGGGCAAAACACCAGAGAAATGGAGATGAGATCTGGGAAGAAAGAGAGTGGAAGCTCTTGA 1815 50.52 MSTPTPAPTSPPATNTTSPPPVTPSAPPPASTSPPSAATPPSFPSSPPPIDSPSPPSPPSTPSISPPPPVGHSPRTPSRSHPTPSTPSTSPPDSASSSNISTGVVVGIAIGGVVIIFVVSILFLCCTKKKRRRRDEEGFYQFGPKVDPYGGQQQWQHNAPLPPDPIIGMVPKPSPPPPPPVASRPLPPQPYTTSSGGSGSMYSGPENPLPPPPPPHMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVDTISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLNFKFEAEVADFGLAKFSSDGNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNQALEDGNFDDLIDPRIQNNYNHYEIARMVECAAACVQHSARRRPRMSQVVRALEGDASLLDLNEGVRPGQSTMYSSHGSLDYDTHQYNQNLKKFKKMALGSTEYGASSKYSAPTSEYGLYPSGSSSEGQNTREMEMRSGKKESGSS 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 603717 607585 - Sed0024053.1 Sed11g0064 728710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0064 604 Gene3D Transferase(Phosphotransferase) domain 1 314 520 - -
Sed11g0064 604 MobiDBLite consensus disorder prediction 562 590 - -
Sed11g0064 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0064 604 MobiDBLite consensus disorder prediction 1 89 - -
Sed11g0064 604 MobiDBLite consensus disorder prediction 144 214 - -
Sed11g0064 604 ProSiteProfiles Protein kinase domain profile. 238 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0064 604 Pfam Protein tyrosine and serine/threonine kinase 243 511 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0064 604 SUPERFAMILY Protein kinase-like (PK-like) 213 511 IPR011009 -
Sed11g0064 604 CDD JMTM_APP_like 97 133 - -
Sed11g0064 604 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 555 IPR047117 -
Sed11g0064 604 SMART serkin_6 238 474 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0064 604 PRINTS Proline rich extensin signature 17 29 - -
Sed11g0064 604 PRINTS Proline rich extensin signature 51 67 - -
Sed11g0064 604 PRINTS Proline rich extensin signature 29 50 - -
Sed11g0064 604 PRINTS Proline rich extensin signature 1 8 - -
Sed11g0064 604 MobiDBLite consensus disorder prediction 1 98 - -
Sed11g0064 604 MobiDBLite consensus disorder prediction 188 202 - -
Sed11g0064 604 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524(InterPro)
Sed11g0064 604 MobiDBLite consensus disorder prediction 164 187 - -
Sed11g0064 604 MobiDBLite consensus disorder prediction 562 604 - -
Sed11g0064 604 FunFam proline-rich receptor-like protein kinase PERK1 216 313 - -
Sed11g0064 604 Gene3D Phosphorylase Kinase; domain 1 215 313 - -
Sed11g0064 604 FunFam Proline-rich receptor-like protein kinase PERK1 314 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0541 Sed-Chr6:4743255 Sed11g0064 Sed-Chr11:603717 2.20E-139 dispersed
Sed11g0064 Sed-Chr11:603717 Sed13g0992 Sed-Chr13:7764733 2.10E-153 dispersed
Sed13g1683 Sed-Chr13:21839602 Sed11g0064 Sed-Chr11:603717 2.30E-69 dispersed
Sed13g1684 Sed-Chr13:21839602 Sed11g0064 Sed-Chr11:603717 1.90E-69 dispersed
Sed14g1705 Sed-Chr14:24919738 Sed11g0064 Sed-Chr11:603717 1.30E-61 dispersed
Sed14g1706 Sed-Chr14:24924622 Sed11g0064 Sed-Chr11:603717 1.20E-56 dispersed
Sed11g0064 Sed-Chr11:603717 Sed11g0065 Sed-Chr11:603717 1.80E-165 tandem
Sed07g1049 Sed-Chr7:7561561 Sed11g0064 Sed-Chr11:603717 2.90E-67 transposed
Sed10g1393 Sed-Chr10:29843960 Sed11g0064 Sed-Chr11:603717 9.60E-213 wgd
Sed11g0064 Sed-Chr11:603717 Sed12g2433 Sed-Chr12:34021080 2.10E-182 wgd
Sed11g0064 Sed-Chr11:603717 Sed08g0796 Sed-Chr8:6160703 3.10E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79879 PF07714 PK_Tyr_Ser-Thr 1.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0064 - - - 0.0