Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0064 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCGCCGCCCCCCGTAACCCCCAGTGCTCCGCCTCCGGCATCCACATCTCCGCCTTCCGCTGCAACGCCGCCGTCATTCCCGTCCTCTCCACCGCCCATAGACTCTCCCTCGCCGCCGTCGCCGCCGTCTACTCCCTCAATTTCTCCGCCTCCCCCGGTCGGCCACAGTCCTCGTACGCCGTCGAGAAGTCATCCAACTCCATCAACGCCGTCGACATCGCCGCCGGATTCCGCCTCCTCGTCCAATATTTCGACCGGAGTTGTGGTCGGAATTGCAATCGGAGGAGTGGTAATCATTTTTGTGGTGAGTATATTGTTTCTTTGTTGTACAAAGAAGAAGAGAAGACGACGTGATGAAGAAGGATTCTATCAATTCGGTCCTAAAGTTGATCCTTATGGGGGTCAGCAGCAATGGCAGCACAATGCTCCTCTGCCTCCTGATCCAATAATTGGGATGGTGCCTAAGCCATCTCCTCCTCCTCCTCCACCAGTTGCATCCCGACCCCTACCTCCGCAGCCCTATACGACTAGCAGTGGAGGTTCAGGCTCTATGTATTCAGGGCCCGAAAATCCGCTCCCTCCACCGCCTCCGCCTCATATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAGTTAGCAATGGCGACCGATGGCTTTTCGGATGCCAATCTCCTGGGACAAGGCGGATTCGGTTATGTCCATAAAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTTAAGCAGTTGAAAGCTGGGAGTGGACAGGGCGAACGAGAATTTCAGGCTGAAGTCGATACCATCAGCCGAGTTCATCACAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCCAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATCGCTTTAGGATCAGCAAAAGGACTGGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCCTCTAACATACTGTTGAATTTCAAGTTTGAAGCAGAGGTTGCTGATTTTGGACTTGCAAAGTTTTCATCGGATGGCAATACCCATGTATCGACCCGAGTTATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGAAAAATCAGATGTCTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGGCCAGTCGATACGAGTAACACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCGTTGTTGAACCAAGCTTTAGAAGATGGAAACTTCGACGATTTGATCGATCCAAGGATTCAGAACAACTACAACCACTATGAGATAGCTCGTATGGTTGAGTGTGCTGCTGCCTGTGTGCAACATTCAGCAAGGCGTCGACCCCGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACGCATCGCTATTGGATCTCAATGAAGGAGTCAGACCCGGACAGAGCACAATGTACAGCTCGCATGGAAGTTTAGACTACGACACCCACCAGTACAATCAGAACTTGAAGAAGTTCAAGAAGATGGCACTCGGTAGCACGGAGTATGGAGCGAGCAGCAAGTACAGCGCACCGACAAGCGAGTACGGGCTATACCCATCGGGGTCTAGCAGCGAAGGGCAAAACACCAGAGAAATGGAGATGAGATCTGGGAAGAAAGAGAGTGGAAGCTCTTGA | 1815 | 50.52 | MSTPTPAPTSPPATNTTSPPPVTPSAPPPASTSPPSAATPPSFPSSPPPIDSPSPPSPPSTPSISPPPPVGHSPRTPSRSHPTPSTPSTSPPDSASSSNISTGVVVGIAIGGVVIIFVVSILFLCCTKKKRRRRDEEGFYQFGPKVDPYGGQQQWQHNAPLPPDPIIGMVPKPSPPPPPPVASRPLPPQPYTTSSGGSGSMYSGPENPLPPPPPPHMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVDTISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLNFKFEAEVADFGLAKFSSDGNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNQALEDGNFDDLIDPRIQNNYNHYEIARMVECAAACVQHSARRRPRMSQVVRALEGDASLLDLNEGVRPGQSTMYSSHGSLDYDTHQYNQNLKKFKKMALGSTEYGASSKYSAPTSEYGLYPSGSSSEGQNTREMEMRSGKKESGSS | 604 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 603717 | 607585 | - | Sed0024053.1 | Sed11g0064 | 728710 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0064 | 604 | Gene3D | Transferase(Phosphotransferase) domain 1 | 314 | 520 | - | - | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 562 | 590 | - | - | |
Sed11g0064 | 604 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 358 | 370 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 144 | 214 | - | - | |
Sed11g0064 | 604 | ProSiteProfiles | Protein kinase domain profile. | 238 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0064 | 604 | Pfam | Protein tyrosine and serine/threonine kinase | 243 | 511 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0064 | 604 | SUPERFAMILY | Protein kinase-like (PK-like) | 213 | 511 | IPR011009 | - | |
Sed11g0064 | 604 | CDD | JMTM_APP_like | 97 | 133 | - | - | |
Sed11g0064 | 604 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 75 | 555 | IPR047117 | - | |
Sed11g0064 | 604 | SMART | serkin_6 | 238 | 474 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0064 | 604 | PRINTS | Proline rich extensin signature | 17 | 29 | - | - | |
Sed11g0064 | 604 | PRINTS | Proline rich extensin signature | 51 | 67 | - | - | |
Sed11g0064 | 604 | PRINTS | Proline rich extensin signature | 29 | 50 | - | - | |
Sed11g0064 | 604 | PRINTS | Proline rich extensin signature | 1 | 8 | - | - | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 188 | 202 | - | - | |
Sed11g0064 | 604 | ProSitePatterns | Protein kinases ATP-binding region signature. | 244 | 266 | IPR017441 | GO:0005524(InterPro) | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 164 | 187 | - | - | |
Sed11g0064 | 604 | MobiDBLite | consensus disorder prediction | 562 | 604 | - | - | |
Sed11g0064 | 604 | FunFam | proline-rich receptor-like protein kinase PERK1 | 216 | 313 | - | - | |
Sed11g0064 | 604 | Gene3D | Phosphorylase Kinase; domain 1 | 215 | 313 | - | - | |
Sed11g0064 | 604 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 314 | 522 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0541 | Sed-Chr6:4743255 | Sed11g0064 | Sed-Chr11:603717 | 2.20E-139 | dispersed | |
Sed11g0064 | Sed-Chr11:603717 | Sed13g0992 | Sed-Chr13:7764733 | 2.10E-153 | dispersed | |
Sed13g1683 | Sed-Chr13:21839602 | Sed11g0064 | Sed-Chr11:603717 | 2.30E-69 | dispersed | |
Sed13g1684 | Sed-Chr13:21839602 | Sed11g0064 | Sed-Chr11:603717 | 1.90E-69 | dispersed | |
Sed14g1705 | Sed-Chr14:24919738 | Sed11g0064 | Sed-Chr11:603717 | 1.30E-61 | dispersed | |
Sed14g1706 | Sed-Chr14:24924622 | Sed11g0064 | Sed-Chr11:603717 | 1.20E-56 | dispersed | |
Sed11g0064 | Sed-Chr11:603717 | Sed11g0065 | Sed-Chr11:603717 | 1.80E-165 | tandem | |
Sed07g1049 | Sed-Chr7:7561561 | Sed11g0064 | Sed-Chr11:603717 | 2.90E-67 | transposed | |
Sed10g1393 | Sed-Chr10:29843960 | Sed11g0064 | Sed-Chr11:603717 | 9.60E-213 | wgd | |
Sed11g0064 | Sed-Chr11:603717 | Sed12g2433 | Sed-Chr12:34021080 | 2.10E-182 | wgd | |
Sed11g0064 | Sed-Chr11:603717 | Sed08g0796 | Sed-Chr8:6160703 | 3.10E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79879 | PF07714 | PK_Tyr_Ser-Thr | 1.90E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0064 | - | - | - | 0.0 |