Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0065 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCGCCGCCCCCCGTAACCCCCAGTGCTCCGCCTCCGGCATCCACATCTCCGCCTTCCGCTGCAACGCCGCCGTCATTCCCGTCCTCTCCACCGCCCATAGACTCTCCCTCGCCGCCGTCGCCGCCGTCTACTCCCTCAATTTCTCCGCCTCCCCCGGTCGGCCACAGTCCTCGTACGCCGTCGAGAAGTCATCCAACTCCATCAACGCCGTCGACATCGCCGCCGGATTCCGCCTCCTCGTCCAATATTTCGACCGGAGTTGTGGTCGGAATTGCAATCGGAGGAGTGGTAATCATTTTTGTGGTGAGTATATTGTTTCTTTGTTGTACAAAGAAGAAGAGAAGACGACGTGATGAAGAAGGATTCTATCAATTCGGTCCTAAAGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATCGCTTTAGGATCAGCAAAAGGACTGGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCCTCTAACATACTGTTGAATTTCAAGTTTGAAGCAGAGGTTGCTGATTTTGGACTTGCAAAGTTTTCATCGGATGGCAATACCCATGTATCGACCCGAGTTATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGAAAAATCAGATGTCTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGGCCAGTCGATACGAGTAACACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCGTTGTTGAACCAAGCTTTAGAAGATGGAAACTTCGACGATTTGATCGATCCAAGGATTCAGAACAACTACAACCACTATGAGATAGCTCGTATGGTTGAGTGTGCTGCTGCCTGTGTGCAACATTCAGCAAGGCGTCGACCCCGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACGCATCGCTATTGGATCTCAATGAAGGAGTCAGACCCGGACAGAGCACAATGTACAGCTCGCATGGAAGTTTAGACTACGACACCCACCAGTACAATCAGAACTTGAAGAAGTTCAAGAAGATGGCACTCGGTAGCACGGAGTATGGAGCGAGCAGCAAGTACAGCGCACCGACAAGCGAGTACGGGCTATACCCATCGGGGTCTAGCAGCGAAGGGCAAAACACCAGAGAAATGGAGATGAGATCTGGGAAGAAAGAGAGTGGAAGCTCTTGA | 1278 | 51.25 | MSTPTPAPTSPPATNTTSPPPVTPSAPPPASTSPPSAATPPSFPSSPPPIDSPSPPSPPSTPSISPPPPVGHSPRTPSRSHPTPSTPSTSPPDSASSSNISTGVVVGIAIGGVVIIFVVSILFLCCTKKKRRRRDEEGFYQFGPKGKGRPTMDWQTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLNFKFEAEVADFGLAKFSSDGNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNQALEDGNFDDLIDPRIQNNYNHYEIARMVECAAACVQHSARRRPRMSQVVRALEGDASLLDLNEGVRPGQSTMYSSHGSLDYDTHQYNQNLKKFKKMALGSTEYGASSKYSAPTSEYGLYPSGSSSEGQNTREMEMRSGKKESGSS | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 603717 | 607585 | - | Sed0024053.2 | Sed11g0065 | 728711 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0065 | 425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0065 | 425 | Pfam | Protein tyrosine and serine/threonine kinase | 149 | 332 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0065 | 425 | ProSiteProfiles | Protein kinase domain profile. | 1 | 338 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0065 | 425 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Sed11g0065 | 425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 144 | 342 | - | - | |
Sed11g0065 | 425 | SUPERFAMILY | Protein kinase-like (PK-like) | 149 | 332 | IPR011009 | - | |
Sed11g0065 | 425 | MobiDBLite | consensus disorder prediction | 383 | 411 | - | - | |
Sed11g0065 | 425 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 148 | 376 | IPR047117 | - | |
Sed11g0065 | 425 | CDD | JMTM_APP_like | 97 | 133 | - | - | |
Sed11g0065 | 425 | PRINTS | Proline rich extensin signature | 51 | 67 | - | - | |
Sed11g0065 | 425 | PRINTS | Proline rich extensin signature | 17 | 29 | - | - | |
Sed11g0065 | 425 | PRINTS | Proline rich extensin signature | 29 | 50 | - | - | |
Sed11g0065 | 425 | PRINTS | Proline rich extensin signature | 1 | 8 | - | - | |
Sed11g0065 | 425 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
Sed11g0065 | 425 | MobiDBLite | consensus disorder prediction | 383 | 425 | - | - | |
Sed11g0065 | 425 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 137 | 343 | - | - | |
Sed11g0065 | 425 | SMART | serkin_6 | 100 | 295 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0065 | Sed-Chr11:603717 | Sed12g2433 | Sed-Chr12:34021080 | 3.40E-126 | dispersed | |
Sed11g0064 | Sed-Chr11:603717 | Sed11g0065 | Sed-Chr11:603717 | 1.80E-165 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79880 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-26 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0065 | - | - | - | 0.0 |