Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0065 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCGCCGCCCCCCGTAACCCCCAGTGCTCCGCCTCCGGCATCCACATCTCCGCCTTCCGCTGCAACGCCGCCGTCATTCCCGTCCTCTCCACCGCCCATAGACTCTCCCTCGCCGCCGTCGCCGCCGTCTACTCCCTCAATTTCTCCGCCTCCCCCGGTCGGCCACAGTCCTCGTACGCCGTCGAGAAGTCATCCAACTCCATCAACGCCGTCGACATCGCCGCCGGATTCCGCCTCCTCGTCCAATATTTCGACCGGAGTTGTGGTCGGAATTGCAATCGGAGGAGTGGTAATCATTTTTGTGGTGAGTATATTGTTTCTTTGTTGTACAAAGAAGAAGAGAAGACGACGTGATGAAGAAGGATTCTATCAATTCGGTCCTAAAGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATCGCTTTAGGATCAGCAAAAGGACTGGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCCTCTAACATACTGTTGAATTTCAAGTTTGAAGCAGAGGTTGCTGATTTTGGACTTGCAAAGTTTTCATCGGATGGCAATACCCATGTATCGACCCGAGTTATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGAAAAATCAGATGTCTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGGCCAGTCGATACGAGTAACACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCGTTGTTGAACCAAGCTTTAGAAGATGGAAACTTCGACGATTTGATCGATCCAAGGATTCAGAACAACTACAACCACTATGAGATAGCTCGTATGGTTGAGTGTGCTGCTGCCTGTGTGCAACATTCAGCAAGGCGTCGACCCCGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACGCATCGCTATTGGATCTCAATGAAGGAGTCAGACCCGGACAGAGCACAATGTACAGCTCGCATGGAAGTTTAGACTACGACACCCACCAGTACAATCAGAACTTGAAGAAGTTCAAGAAGATGGCACTCGGTAGCACGGAGTATGGAGCGAGCAGCAAGTACAGCGCACCGACAAGCGAGTACGGGCTATACCCATCGGGGTCTAGCAGCGAAGGGCAAAACACCAGAGAAATGGAGATGAGATCTGGGAAGAAAGAGAGTGGAAGCTCTTGA 1278 51.25 MSTPTPAPTSPPATNTTSPPPVTPSAPPPASTSPPSAATPPSFPSSPPPIDSPSPPSPPSTPSISPPPPVGHSPRTPSRSHPTPSTPSTSPPDSASSSNISTGVVVGIAIGGVVIIFVVSILFLCCTKKKRRRRDEEGFYQFGPKGKGRPTMDWQTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLNFKFEAEVADFGLAKFSSDGNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNQALEDGNFDDLIDPRIQNNYNHYEIARMVECAAACVQHSARRRPRMSQVVRALEGDASLLDLNEGVRPGQSTMYSSHGSLDYDTHQYNQNLKKFKKMALGSTEYGASSKYSAPTSEYGLYPSGSSSEGQNTREMEMRSGKKESGSS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 603717 607585 - Sed0024053.2 Sed11g0065 728711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0065 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0065 425 Pfam Protein tyrosine and serine/threonine kinase 149 332 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0065 425 ProSiteProfiles Protein kinase domain profile. 1 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0065 425 MobiDBLite consensus disorder prediction 1 89 - -
Sed11g0065 425 Gene3D Transferase(Phosphotransferase) domain 1 144 342 - -
Sed11g0065 425 SUPERFAMILY Protein kinase-like (PK-like) 149 332 IPR011009 -
Sed11g0065 425 MobiDBLite consensus disorder prediction 383 411 - -
Sed11g0065 425 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 148 376 IPR047117 -
Sed11g0065 425 CDD JMTM_APP_like 97 133 - -
Sed11g0065 425 PRINTS Proline rich extensin signature 51 67 - -
Sed11g0065 425 PRINTS Proline rich extensin signature 17 29 - -
Sed11g0065 425 PRINTS Proline rich extensin signature 29 50 - -
Sed11g0065 425 PRINTS Proline rich extensin signature 1 8 - -
Sed11g0065 425 MobiDBLite consensus disorder prediction 1 98 - -
Sed11g0065 425 MobiDBLite consensus disorder prediction 383 425 - -
Sed11g0065 425 FunFam Proline-rich receptor-like protein kinase PERK1 137 343 - -
Sed11g0065 425 SMART serkin_6 100 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0065 Sed-Chr11:603717 Sed12g2433 Sed-Chr12:34021080 3.40E-126 dispersed
Sed11g0064 Sed-Chr11:603717 Sed11g0065 Sed-Chr11:603717 1.80E-165 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79880 PF07714 PK_Tyr_Ser-Thr 2.70E-26 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0065 - - - 0.0