Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0071 | ATGAAGAAAAACACCCATTTCAACATTCATCTCCAAATCTCCCTCCTCATTGGCACTCTTTTGTGCCTAACTTTCTCCGGCGAGTTTCTTCAAGTTTCCGGCCATGGCGGCGCCGGCCTGACCGACGCCGAAGCTCACTACATCCGTCAACGGCAGCTTCTCTACTACAAGGATGAATTCGGCGACCGTGGTGAAGAAATCACCGTCGATCCCAAACTTGTTTTCGAAAATGGCAGAATCAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTTTCCGATCCTTTGAATCTCACTCAAAATTGGGTTGGATCTGATGTTTGTCGTTACAAAGGGGTTTTCTGTGCGCCGGCGCCGGATAATTCCTCCATCCGTACAGTCGCTGGAATCGACCTCAACCACGCCGACATTGCCGGCTACATGCCGGAGGAGCTCGGCCTCTTAACCGACCTTGCATTGTTTCATATCAACTCGAACCGATTCTGCGGCACTGTTCCTCACAAGTTTAAGCACTTGAAAATGCTGTTCGAGTTAGATCTGAGCAACAATCGCTTCGCCGGCAAGTTCCCCGGAGTGGTTCTGGAGCTGCCGGAGCTGAAGTTCTTGGATCTGAGATTCAACGAATTTGAAGGGACTGTTCCGAAAGAGCTTTTCGACAAGGATTTGGATGCAATTTTCATTAACCATAATCGATTCCGGTTTGACTTGCCGGAGAATTTTGGGAACTCGCCGGTGTCGGTGATTGTTCTTGCTAATAACAAATTTCACGGCTGTGTTCCGGGGAGTATTGGGAATATGACGAATTTGAATGAGGTTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGCCGGAGATTGGGAAGTTGAACAATCTGACGGTGTTTGATGTGAGTTTCAATGAGTTTTTGGGGCCATTGCCGGAGACGATCGCCGGAATGAAGAGCTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGCAAGTATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTATTCGTATAATTTCTTTACTGGTGAAGCGCCGTCGTGTTTGGCGTTGCCGGATTTCGATGACCGGCGGAATTGTTTGCCGGATCGGCCGGTTCAGCGGTCGGAGAGGCAATGTAAGTCGTTCCTGTCTAAGAATGTGGATTGTAGTTCTTTTGGTTGTAAATCTTTTGTTGCTCCGTCGCCGCCGGTGGTGGTGCCGTCTCCGCCGCCGCCTACTCACAAATCACACCCGGTTTACCGTCCTCGGTCTCCTCCTCCACCGGCTCCCTCACCTCCTCCACCGCCGGTTTACTCACCTCCGCCTCCGGTTTACTCTCCGCCTCCACCATCTCCACCACCGCCTTCTCCCCCACCACCTCCTCCCCCGGTTTACTCTCCGCCCCCACCTCCGCCATCTCCTCCACCACCGCCCCCACCGGTTTACTCTCCACCTCCACCGCCACCATCTCCTCCGCCGCCTTCGCCGCCTCCTCCCGTTTACTCTCCGCCCCCACCACCACCATCTCCACCGCCGCCTTCACCTCCACCACCAGTTTACTCTCCACCCCCACCACCTCCATCACCGCCGCCACCGGCGCCGGTCTATTGTGTCCAACCTTCTCCACCGCCGCCACCACCAAACTCTCCACCACCACCATTGTTCTCTCCGCCCCCACCTGTATACTACTACAATTCACCACCACCGCCACCAATGTATTCTTCTCCGCCACCGCCACATTCACCACCGCCTCCACCACATTCACCGCCGCCACCAATCTATCCCTACTTATCTCCCCCACCTCCTCCACCTGTCAATTCCCCACCACCACCGGTCTATTCGCCGCCGCCGCCGTGTATAGAGCCACCTCCACCGCCATCGCCCCCGCCGTGTATAGAATATCACGAGCCCCCGCCACCGCCACCGCCCGTCCAATACCTCCCTCCACCATCTCCTTCGCCCCCACCGCCACCACCGCCGACCCCGATTTACCATTCGCCTCCACCACCCGTCTATTACTCTCCACCACCACCATCGCCGTCCCCATCGCCGGTATACGAAGGGCCATTGCCACCAATCTATGGAGTTTCATATGCCTCTCCTCCACCACCACCCTTCTATTGA | 2145 | 54.55 | MKKNTHFNIHLQISLLIGTLLCLTFSGEFLQVSGHGGAGLTDAEAHYIRQRQLLYYKDEFGDRGEEITVDPKLVFENGRIRNAYIALQAWKQAILSDPLNLTQNWVGSDVCRYKGVFCAPAPDNSSIRTVAGIDLNHADIAGYMPEELGLLTDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPGVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTNLNEVILMNNGFRSCLPPEIGKLNNLTVFDVSFNEFLGPLPETIAGMKSLEQLNVAHNFLSGKIPASICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPDRPVQRSERQCKSFLSKNVDCSSFGCKSFVAPSPPVVVPSPPPPTHKSHPVYRPRSPPPPAPSPPPPPVYSPPPPVYSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCVQPSPPPPPPNSPPPPLFSPPPPVYYYNSPPPPPMYSSPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVNSPPPPVYSPPPPCIEPPPPPSPPPCIEYHEPPPPPPPVQYLPPPSPSPPPPPPPTPIYHSPPPPVYYSPPPPSPSPSPVYEGPLPPIYGVSYASPPPPPFY | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 675560 | 679196 | + | Sed0015017.1 | Sed11g0071 | 728717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0071 | 714 | FunFam | Leucine-rich repeat extensin-like protein 5 | 246 | 385 | - | - | |
Sed11g0071 | 714 | Pfam | Leucine rich repeat | 155 | 211 | IPR001611 | GO:0005515(InterPro) | |
Sed11g0071 | 714 | PRINTS | Proline rich extensin signature | 398 | 419 | - | - | |
Sed11g0071 | 714 | PRINTS | Proline rich extensin signature | 439 | 456 | - | - | |
Sed11g0071 | 714 | PRINTS | Proline rich extensin signature | 419 | 435 | - | - | |
Sed11g0071 | 714 | PRINTS | Proline rich extensin signature | 457 | 482 | - | - | |
Sed11g0071 | 714 | SUPERFAMILY | L domain-like | 84 | 364 | - | - | |
Sed11g0071 | 714 | Gene3D | Ribonuclease Inhibitor | 83 | 245 | IPR032675 | - | |
Sed11g0071 | 714 | Gene3D | Ribonuclease Inhibitor | 246 | 394 | IPR032675 | - | |
Sed11g0071 | 714 | Pfam | Leucine Rich Repeat | 319 | 341 | IPR001611 | GO:0005515(InterPro) | |
Sed11g0071 | 714 | Pfam | Leucine Rich Repeat | 295 | 317 | IPR001611 | GO:0005515(InterPro) | |
Sed11g0071 | 714 | MobiDBLite | consensus disorder prediction | 637 | 669 | - | - | |
Sed11g0071 | 714 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 31 | 513 | IPR051582 | - | |
Sed11g0071 | 714 | MobiDBLite | consensus disorder prediction | 410 | 538 | - | - | |
Sed11g0071 | 714 | FunFam | Leucine-rich repeat extensin-like protein 1 | 84 | 245 | - | - | |
Sed11g0071 | 714 | Pfam | Leucine rich repeat N-terminal domain | 86 | 118 | IPR013210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0071 | Sed-Chr11:675560 | Sed12g1856 | Sed-Chr12:29807283 | 8.90E-71 | dispersed | |
Sed09g0043 | Sed-Chr9:356135 | Sed11g0071 | Sed-Chr11:675560 | 4.90E-36 | transposed | |
Sed10g1400 | Sed-Chr10:30049672 | Sed11g0071 | Sed-Chr11:675560 | 1.50E-97 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0071 | - | - | - | 0.0 |