Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0071 ATGAAGAAAAACACCCATTTCAACATTCATCTCCAAATCTCCCTCCTCATTGGCACTCTTTTGTGCCTAACTTTCTCCGGCGAGTTTCTTCAAGTTTCCGGCCATGGCGGCGCCGGCCTGACCGACGCCGAAGCTCACTACATCCGTCAACGGCAGCTTCTCTACTACAAGGATGAATTCGGCGACCGTGGTGAAGAAATCACCGTCGATCCCAAACTTGTTTTCGAAAATGGCAGAATCAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTTTCCGATCCTTTGAATCTCACTCAAAATTGGGTTGGATCTGATGTTTGTCGTTACAAAGGGGTTTTCTGTGCGCCGGCGCCGGATAATTCCTCCATCCGTACAGTCGCTGGAATCGACCTCAACCACGCCGACATTGCCGGCTACATGCCGGAGGAGCTCGGCCTCTTAACCGACCTTGCATTGTTTCATATCAACTCGAACCGATTCTGCGGCACTGTTCCTCACAAGTTTAAGCACTTGAAAATGCTGTTCGAGTTAGATCTGAGCAACAATCGCTTCGCCGGCAAGTTCCCCGGAGTGGTTCTGGAGCTGCCGGAGCTGAAGTTCTTGGATCTGAGATTCAACGAATTTGAAGGGACTGTTCCGAAAGAGCTTTTCGACAAGGATTTGGATGCAATTTTCATTAACCATAATCGATTCCGGTTTGACTTGCCGGAGAATTTTGGGAACTCGCCGGTGTCGGTGATTGTTCTTGCTAATAACAAATTTCACGGCTGTGTTCCGGGGAGTATTGGGAATATGACGAATTTGAATGAGGTTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGCCGGAGATTGGGAAGTTGAACAATCTGACGGTGTTTGATGTGAGTTTCAATGAGTTTTTGGGGCCATTGCCGGAGACGATCGCCGGAATGAAGAGCTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGCAAGTATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTATTCGTATAATTTCTTTACTGGTGAAGCGCCGTCGTGTTTGGCGTTGCCGGATTTCGATGACCGGCGGAATTGTTTGCCGGATCGGCCGGTTCAGCGGTCGGAGAGGCAATGTAAGTCGTTCCTGTCTAAGAATGTGGATTGTAGTTCTTTTGGTTGTAAATCTTTTGTTGCTCCGTCGCCGCCGGTGGTGGTGCCGTCTCCGCCGCCGCCTACTCACAAATCACACCCGGTTTACCGTCCTCGGTCTCCTCCTCCACCGGCTCCCTCACCTCCTCCACCGCCGGTTTACTCACCTCCGCCTCCGGTTTACTCTCCGCCTCCACCATCTCCACCACCGCCTTCTCCCCCACCACCTCCTCCCCCGGTTTACTCTCCGCCCCCACCTCCGCCATCTCCTCCACCACCGCCCCCACCGGTTTACTCTCCACCTCCACCGCCACCATCTCCTCCGCCGCCTTCGCCGCCTCCTCCCGTTTACTCTCCGCCCCCACCACCACCATCTCCACCGCCGCCTTCACCTCCACCACCAGTTTACTCTCCACCCCCACCACCTCCATCACCGCCGCCACCGGCGCCGGTCTATTGTGTCCAACCTTCTCCACCGCCGCCACCACCAAACTCTCCACCACCACCATTGTTCTCTCCGCCCCCACCTGTATACTACTACAATTCACCACCACCGCCACCAATGTATTCTTCTCCGCCACCGCCACATTCACCACCGCCTCCACCACATTCACCGCCGCCACCAATCTATCCCTACTTATCTCCCCCACCTCCTCCACCTGTCAATTCCCCACCACCACCGGTCTATTCGCCGCCGCCGCCGTGTATAGAGCCACCTCCACCGCCATCGCCCCCGCCGTGTATAGAATATCACGAGCCCCCGCCACCGCCACCGCCCGTCCAATACCTCCCTCCACCATCTCCTTCGCCCCCACCGCCACCACCGCCGACCCCGATTTACCATTCGCCTCCACCACCCGTCTATTACTCTCCACCACCACCATCGCCGTCCCCATCGCCGGTATACGAAGGGCCATTGCCACCAATCTATGGAGTTTCATATGCCTCTCCTCCACCACCACCCTTCTATTGA 2145 54.55 MKKNTHFNIHLQISLLIGTLLCLTFSGEFLQVSGHGGAGLTDAEAHYIRQRQLLYYKDEFGDRGEEITVDPKLVFENGRIRNAYIALQAWKQAILSDPLNLTQNWVGSDVCRYKGVFCAPAPDNSSIRTVAGIDLNHADIAGYMPEELGLLTDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPGVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTNLNEVILMNNGFRSCLPPEIGKLNNLTVFDVSFNEFLGPLPETIAGMKSLEQLNVAHNFLSGKIPASICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPDRPVQRSERQCKSFLSKNVDCSSFGCKSFVAPSPPVVVPSPPPPTHKSHPVYRPRSPPPPAPSPPPPPVYSPPPPVYSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCVQPSPPPPPPNSPPPPLFSPPPPVYYYNSPPPPPMYSSPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVNSPPPPVYSPPPPCIEPPPPPSPPPCIEYHEPPPPPPPVQYLPPPSPSPPPPPPPTPIYHSPPPPVYYSPPPPSPSPSPVYEGPLPPIYGVSYASPPPPPFY 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 675560 679196 + Sed0015017.1 Sed11g0071 728717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0071 714 FunFam Leucine-rich repeat extensin-like protein 5 246 385 - -
Sed11g0071 714 Pfam Leucine rich repeat 155 211 IPR001611 GO:0005515(InterPro)
Sed11g0071 714 PRINTS Proline rich extensin signature 398 419 - -
Sed11g0071 714 PRINTS Proline rich extensin signature 439 456 - -
Sed11g0071 714 PRINTS Proline rich extensin signature 419 435 - -
Sed11g0071 714 PRINTS Proline rich extensin signature 457 482 - -
Sed11g0071 714 SUPERFAMILY L domain-like 84 364 - -
Sed11g0071 714 Gene3D Ribonuclease Inhibitor 83 245 IPR032675 -
Sed11g0071 714 Gene3D Ribonuclease Inhibitor 246 394 IPR032675 -
Sed11g0071 714 Pfam Leucine Rich Repeat 319 341 IPR001611 GO:0005515(InterPro)
Sed11g0071 714 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515(InterPro)
Sed11g0071 714 MobiDBLite consensus disorder prediction 637 669 - -
Sed11g0071 714 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 513 IPR051582 -
Sed11g0071 714 MobiDBLite consensus disorder prediction 410 538 - -
Sed11g0071 714 FunFam Leucine-rich repeat extensin-like protein 1 84 245 - -
Sed11g0071 714 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0071 Sed-Chr11:675560 Sed12g1856 Sed-Chr12:29807283 8.90E-71 dispersed
Sed09g0043 Sed-Chr9:356135 Sed11g0071 Sed-Chr11:675560 4.90E-36 transposed
Sed10g1400 Sed-Chr10:30049672 Sed11g0071 Sed-Chr11:675560 1.50E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0071 - - - 0.0