Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0086 ATGGCTTCTTCCATTTCTTCTCTGTGCTCTGTTTTCGTTCTTCTTGCTCTGTTTCAGTGGGCTAACTCGGAGCCGACTCAGGACAAGCAAGCCCTTCTCGATTTCCTCTCCAAAACTCCCCATGAGAATCGTGTTCAATGGAATCGCTCTAATTCCGCCTGTAATTGGATCGGCGTCGAATGCGATAAGAATCAGTCGTTTGTTTACTCTCTCCGCTTGCCCGGCGTCGGCCTCGTCGGAGCGATTCCGTCCAACACGATCGGGAAACTGACTCAGCTCCGAGTTCTCAGTCTCCGCTCCAATCGCCTCTCCGGCGAGATCCCGTCGGATTTTTCCAATTTGGTAATGCTGCGGAATCTGTATCTTCAGGACAATGCCTTCTCCGGCGAGTTCCCGGCGAGTTTGACTCGTTTAACTCGGCTCACTCGCTTGGATTTGTCTTCCAACAAATTCACCGGTCCGATTCCGGCGTCGGTGGATAATCTGACCCACCTGACCGGGTTTTTCCTACAGAAGAATGGATTCTCCGGTTCGATTCCGAGCATCTCCGCCGTGAACCTAACAAACTTCAACGTCTCCAACAACAAACTCAACGGCTCGATTCCGATTCCGTTACGGAAATTCCCAGACTCCTCCTTCGCCGGAAACCTAAATCTCTGCGGCGGACACTTCCCGTCCTGCAACCCATCTCCCCCGCCGGGAAACCCACCGCCAACCCCAGGCGGGAAATCGAAAAAGCTGTCAACCGGCGGCGTGATCGGGGTCATAATCGGCGCCGTGGGCGGAGCATTCCTGGTCCTCCTAGTCGTCCTCCTCTGCGTCCGCCGGCGGAAACCGGGGAGCACCCAGAAGAGCGCAGGGACGGTGGGGGGGAGGGGGATACCGTCGACGGCGGGGGAGGCGGGGACGTCGTCGTCGAAAGACGACATAACGGGGGGGTCGGCGGCGGAGGCGGCGGAGAGGAACAAGCTGGTGTTCATGGAGGGGGGGAATTACAGCTTCGACCTGGAGGATCTGCTGAGGGCGTCGGCGGAGGTGCTGGGGAAGGGGAGCTTGGGGACGTCGTACAAGGCGGTGCTCGAGGAGGGCACCACCGTCGTCGTCAAGCGCCTCAAGGACGTCGCCGCCACCAAGAAGGAATTCGAGGCCTTAATGGCGGATTTGGGCAAAATTAACCACCAAAACGTCGTTCCCTTTCGAGCTTTTTACTTCTCCAAGGATGAGAAATTGTTGGTTTCCGATTACATTCCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGGTCAGGCAGAACACCACTAGACTGGGATTCAAGAGTGAGAATCGCACTCAGCGCCGGCAAAGGCTTAGCCCACCTCCACCTTGCCGGAAAACAAGTCCACGGCAACATCAAATCCTCCAACGTCCTCCTCCGGCCGGACCACGAAGCCTGCATCTCCGACTTCGGCCTCCACCCACTAGCCGCCGCCGCCGCCGCCGCCGCCCCGCACCACCGCATCGCCGGCTACCGCGCCCCGGAGATCCTCGAAACCCGGAAACCCACTTTCAAATCCGACGTCTACAGCTACGGCGTCCTCCTCCTGGAGCTCCTCACCGGAAAAGCCCCGAACCAGCACTCCCTCGGCGAGGACGGCATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAGTGGACGGCGGAGGTCTTCGACGCCGAACTGATGCGGTTCCACAACATCGAAGAGGAGATGGTTCAGCTGCTTCAGATTGCGATGTCTTGCGTCTCGACGGTTCCCGATCAGCGGCCGGCGATGCCGGAAGTTGTGCGGATGATCGAGGACATGAACCGGAACAGCGAGACGGACGATGGGTTGCGCCAGTCTTCCGATGACCCCTCCAAGGGCGGCTCCGATGTCAACACGCCGCCGGCAGAGTCCAGAACGCCGCCGCGGTTGACGCCGTAA 1956 59.3 MASSISSLCSVFVLLALFQWANSEPTQDKQALLDFLSKTPHENRVQWNRSNSACNWIGVECDKNQSFVYSLRLPGVGLVGAIPSNTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFSGEFPASLTRLTRLTRLDLSSNKFTGPIPASVDNLTHLTGFFLQKNGFSGSIPSISAVNLTNFNVSNNKLNGSIPIPLRKFPDSSFAGNLNLCGGHFPSCNPSPPPGNPPPTPGGKSKKLSTGGVIGVIIGAVGGAFLVLLVVLLCVRRRKPGSTQKSAGTVGGRGIPSTAGEAGTSSSKDDITGGSAAEAAERNKLVFMEGGNYSFDLEDLLRASAEVLGKGSLGTSYKAVLEEGTTVVVKRLKDVAATKKEFEALMADLGKINHQNVVPFRAFYFSKDEKLLVSDYIPTGSLSASLHGSRGSGRTPLDWDSRVRIALSAGKGLAHLHLAGKQVHGNIKSSNVLLRPDHEACISDFGLHPLAAAAAAAAPHHRIAGYRAPEILETRKPTFKSDVYSYGVLLLELLTGKAPNQHSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNRNSETDDGLRQSSDDPSKGGSDVNTPPAESRTPPRLTP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 807827 814393 + Sed0014581.1 Sed11g0086 728732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0086 651 Pfam Leucine rich repeat 79 126 IPR001611 GO:0005515(InterPro)
Sed11g0086 651 ProSiteProfiles Protein kinase domain profile. 341 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0086 651 MobiDBLite consensus disorder prediction 627 643 - -
Sed11g0086 651 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Sed11g0086 651 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Sed11g0086 651 Gene3D Transferase(Phosphotransferase) domain 1 416 631 - -
Sed11g0086 651 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Sed11g0086 651 SUPERFAMILY Protein kinase-like (PK-like) 345 610 IPR011009 -
Sed11g0086 651 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Sed11g0086 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 416 623 - -
Sed11g0086 651 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
Sed11g0086 651 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Sed11g0086 651 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Sed11g0086 651 Pfam Protein tyrosine and serine/threonine kinase 345 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0086 651 MobiDBLite consensus disorder prediction 611 651 - -
Sed11g0086 651 SUPERFAMILY L domain-like 46 208 - -
Sed11g0086 651 MobiDBLite consensus disorder prediction 611 626 - -
Sed11g0086 651 MobiDBLite consensus disorder prediction 280 314 - -
Sed11g0086 651 FunFam pollen receptor-like kinase 1 311 415 - -
Sed11g0086 651 PANTHER OS05G0588300 PROTEIN 10 618 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3059 Sed-Chr4:41636621 Sed11g0086 Sed-Chr11:807827 7.40E-80 dispersed
Sed06g0222 Sed-Chr6:1658158 Sed11g0086 Sed-Chr11:807827 1.20E-77 dispersed
Sed11g0086 Sed-Chr11:807827 Sed14g0561 Sed-Chr14:5658830 1.90E-128 dispersed
Sed03g0148 Sed-Chr3:925579 Sed11g0086 Sed-Chr11:807827 3.50E-55 transposed
Sed11g0086 Sed-Chr11:807827 Sed12g2419 Sed-Chr12:33925304 6.00E-199 wgd
Sed11g0086 Sed-Chr11:807827 Sed08g0731 Sed-Chr8:5339585 1.20E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79881 PF07714 PK_Tyr_Ser-Thr 7.40E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0086 - - - 0.0