Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0090 ATGGTGGCCGGTGGTAATTTGTTCGAGTGGGTTAAGGTTTTGATTTTGTGGTGTTTATTGTTGGTTGCGGCGGCGATGAGGGCGGCGGTGGTGCTGTGGTGGCGGCCGAGAAAAATTCAACAGCATTTTTTCCGGCAAGGAATTAGTGGGCCGCCGTACCGTTTCCTCGTCGGAAATGTTAAGGAAGTTGTCGGAATGATGATTAAAGCCTCTTCCGATCATTCTTCTTACCCTAATTTTTCTCATAATATTCTTCCTCTTGTTCTTCCTTTTTATCATCATTGGAACAAGATTTATGGTTCTAAATTTCTGGTGTGGTTCGGGCCAACAGTGAGGTTGGCGGTGTCGGATCCTGACCTCATTCGAGAAATCTTCACATCGAAATCAGAATTCTGCGAAAAATACGAACCTCACCCGCTCGTTAAACAGCTAGAAGGCATTGGCCTCCTCAGCCTCAAAGGCCAAAAATGGGATCTCCATCGCAAGATCATCTCCCCTTCTTTTCACATGGACAATCTCAAATTGATGATTCCAGTGATGGCAAAAAGTGTTGTGGATATGTTGGAGAAATGGTCAGCAGATTCCATGGAGGTGGAAATAGAAGTTTCCAATTGGTTCCAAACCCTAACTGAAGATGTTATCACTAGAACAGCTTTTGGCTCTAGCTATGAAGATGGTAAAGCCATTTTTCACTTACAATCCCAACAAATGATCCTTGCTGCCCAAGCCTTCCAAAAAGTTTTCATCCCAGGCTACAGATTCTTACCGACGAGGACGAATGTGAACTCGTGGAGACTTGACAAGGAAATAAGGAAATCGTTGATGAAACTAATCGAACGACGACGAGAGAATTCGATCGAGAGCTCGAAGGATTTGCTGGGGGTGATGCTAAGGGCATCAAACTCTTCTCCATCATCAACTATTACTATGAATGACATAGTTGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATATGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAAGAACAGGCACGTGATGAGGTGCTAAGTGAGTGTGGAGCACGTGACTTACCCTCCAAGGATGATGTTGCAAAGCTAAAAATGTTGAGTATGATCATCAATGAATCATTGCGGTTATATCCACCAACGGTGGCTACTATTCGACAAGCAAAAGTTGATATAGAACTTGGTGGTTACATGATTCCACGTGGCATTGAACTCTTGATCCCGATTTTAGCGGTTCATCATGATCAAAAGATATGGGGAAATGATGTGAATGAGTTTAATCCAGGACGATTTGCAGAAGGTGTGGCAAGGGCGACCAATCATCGAGTTGGGTTCATTCCATTCGGACTCGGAGCTCGAACTTGTATTGGACAAAATTTAGCTATATTGCAAGCAAAGTTGACTCTTGCAATTATACTTCAAAGATTCTCTTTTCGATTAGGACCATCTTATCAACATTCACCTGCAGTTCATATGCTACTTTATCCACAATATGGTGCACCTATTATTTTCAAAAAATTATCCACCACATTAATCCATCAAGATCAACACTCATGA 1578 42.97 MVAGGNLFEWVKVLILWCLLLVAAAMRAAVVLWWRPRKIQQHFFRQGISGPPYRFLVGNVKEVVGMMIKASSDHSSYPNFSHNILPLVLPFYHHWNKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKYEPHPLVKQLEGIGLLSLKGQKWDLHRKIISPSFHMDNLKLMIPVMAKSVVDMLEKWSADSMEVEIEVSNWFQTLTEDVITRTAFGSSYEDGKAIFHLQSQQMILAAQAFQKVFIPGYRFLPTRTNVNSWRLDKEIRKSLMKLIERRRENSIESSKDLLGVMLRASNSSPSSTITMNDIVEECKGFFFAGKQTTSNMLTWTMILMAMHPQWQEQARDEVLSECGARDLPSKDDVAKLKMLSMIINESLRLYPPTVATIRQAKVDIELGGYMIPRGIELLIPILAVHHDQKIWGNDVNEFNPGRFAEGVARATNHRVGFIPFGLGARTCIGQNLAILQAKLTLAIILQRFSFRLGPSYQHSPAVHMLLYPQYGAPIIFKKLSTTLIHQDQHS 525
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 875648 879733 + Sed0003543.1 Sed11g0090 728736
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0090 525 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 506 IPR050665 GO:0004497(PANTHER)|GO:0010268(PANTHER)|GO:0016131(PANTHER)
Sed11g0090 525 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 Pfam Cytochrome P450 92 496 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed11g0090 525 CDD CYP734 89 508 - -
Sed11g0090 525 FunFam Cytochrome P450 734A1 33 515 - -
Sed11g0090 525 SUPERFAMILY Cytochrome P450 84 512 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g0090 525 Gene3D Cytochrome P450 32 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0090 Sed-Chr11:875648 Sed12g2390 Sed-Chr12:33773706 1.20E-202 dispersed
Sed06g1411 Sed-Chr6:38761225 Sed11g0090 Sed-Chr11:875648 9.50E-99 transposed
Sed07g2343 Sed-Chr7:39311203 Sed11g0090 Sed-Chr11:875648 8.40E-11 transposed
Sed10g1426 Sed-Chr10:30418838 Sed11g0090 Sed-Chr11:875648 2.10E-263 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0090 K15639 - csv:101208789 912.909