Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0101 ATGGACGAGTCAGACCACGAAAGCACCTGCTCCTCCATCACAATCCCCGACTCCACCCGGAGCTGGCTAAGCAACGCCAGCTTCCGCAGCACCACGACAACCGACACGACCGCCACCGCATCCCGAAAGCCCCACAAGGCAAACGAAGCAGCGTGGGAGGCGATACGGCGCCTTCGGTCGACACACGGCAGGCTCGGGCTGGAGAACTTCAAGCTCATCCGGCGGGTGGGGAGCGGGGACATTGGGAACGTGTACCTGTGCGAGATAAGGAACCTGGCCACCGCGTCGAGGAAGCGGTGCTGTTACGCGATGAAGGTGGTCGACCGAGAGGCGCTGGCCGTGCGGAAGAAGGAGCGGAGGGCGGACATGGAGAGGGAGATACTGAAGGTGCTTGATCATCCGTTTTTGCCAACTTTGTATGCCGAGTTTGAGGCCGACCATTACTCTTGTTTGGTTATGGAGTTTTGCCCCGGCGGGGATTTGTACGCCGCTCGCCTTCGCCTCCCCTCCAAGCGCTTCCCCATCTCTTCTGCTAGGTTTTATACAGCAGAGATAATCTTAGCCCTCGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTAAAGCCCGAAAACGTGCTCGTTAGAGAAGACGGCCACATCATGTTGTCGGATTTCGACCTTTGTCTCAAATGCGACGTCGTTCCAAAGCTCATCCGCTGCCGCACCACCGCCCTCCGCCACCCCTCCGCCGCCGTCGCCACCGCCACCACCACCACTACCACCCCCTGCGCCGCCGCCCCCACCTGCTTCTCCCTTGCCCGCCGTCGTAAACCCCCCACCGTCACCACCATCACCGAACACGCCACCCCCTCCTCCTCCACCGCCGCCGCGGTCGCCGTCGCTGTCGCCGCCGTGTACGGCTGCGATAGCGACGGCGACGGCGAATTCGAGCCGGAACCGGAATTAGTAGCGGAACCCATTAATGCCCGGTCGAAATCGTTCGTGGGTACCCACGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAGGGTCACGGCGGCGCCGTCGATTGGTGGACATTGGGGATTTTTCTCTACGAAATGGTGTACGGAAAAACCCCATTTAAAGGGGAAAACAACGAGAAAACATTGACGAATATTTTGAAGCAGCCATTAACGTTTCCGAGGATTGGGTTTAATTGCAACAAATTCGAATTTGAAGAAATTGCGAAAGTTGAGGATTTAATTAAGAAGCTTTTGGTGAAGAATCCGAAAAAGAGAATCGGAAGCTTAATGGGTTCGGTTGAAATTAAACGACATGAGTTTTTTAAAGGTGTGAATTGGGCTCTGATTCGCTCCGTCCGGCCGCCCCACATTCCGGCCAACTCCGCCGCCGGCGCCGATCATGTTCTTCGCCACAATTACAACAACAACAATGTTCTTAAGTACCCTTCTAATTACTTGCTTAAATTGAGTAAAAAGCAACGACAACAACCTTATCAAATTCCTCCTCACCATTTCGATTACTTCTAA 1515 54.98 MDESDHESTCSSITIPDSTRSWLSNASFRSTTTTDTTATASRKPHKANEAAWEAIRRLRSTHGRLGLENFKLIRRVGSGDIGNVYLCEIRNLATASRKRCCYAMKVVDREALAVRKKERRADMEREILKVLDHPFLPTLYAEFEADHYSCLVMEFCPGGDLYAARLRLPSKRFPISSARFYTAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTALRHPSAAVATATTTTTTPCAAAPTCFSLARRRKPPTVTTITEHATPSSSTAAAVAVAVAAVYGCDSDGDGEFEPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGGAVDWWTLGIFLYEMVYGKTPFKGENNEKTLTNILKQPLTFPRIGFNCNKFEFEEIAKVEDLIKKLLVKNPKKRIGSLMGSVEIKRHEFFKGVNWALIRSVRPPHIPANSAAGADHVLRHNYNNNNVLKYPSNYLLKLSKKQRQQPYQIPPHHFDYF 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 933784 936828 - Sed0012734.1 Sed11g0101 728747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0101 504 CDD STKc_phototropin_like 70 455 - -
Sed11g0101 504 FunFam protein kinase PINOID 2 68 155 - -
Sed11g0101 504 Gene3D Phosphorylase Kinase; domain 1 21 171 - -
Sed11g0101 504 ProSiteProfiles Protein kinase domain profile. 70 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0101 504 FunFam serine/threonine-protein kinase D6PK-like 324 455 - -
Sed11g0101 504 FunFam protein kinase PINOID 156 224 - -
Sed11g0101 504 SUPERFAMILY Protein kinase-like (PK-like) 53 459 IPR011009 -
Sed11g0101 504 Gene3D Transferase(Phosphotransferase) domain 1 172 292 - -
Sed11g0101 504 SMART serkin_6 70 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0101 504 Gene3D Transferase(Phosphotransferase) domain 1 324 455 - -
Sed11g0101 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0101 504 PANTHER FLIPPASE KINASE 1-RELATED 25 459 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed11g0101 504 Pfam Protein kinase domain 71 225 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0101 504 Pfam Protein kinase domain 326 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2642 Sed-Chr8:38606246 Sed11g0101 Sed-Chr11:933784 4.50E-100 dispersed
Sed11g0101 Sed-Chr11:933784 Sed11g1164 Sed-Chr11:27556452 3.80E-108 dispersed
Sed11g0101 Sed-Chr11:933784 Sed10g0547 Sed-Chr10:3536636 1.40E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79882 PF00069 Pkinase 6.50E-32 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0101 K08286 - csv:101202905 692.575